PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G19960.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 564aa MW: 63526.2 Da PI: 5.7021

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G19960.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.3	1e-06	518	544	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+ C+++ rtG+C+ Gd C +aH++ OGLUM08G19960.1 518 PKTVMCPDWCRTGHCSSGDGCEYAHSQ 544 79***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 564 aa Download sequence
MKQEEDELAV DPGVGAVCDP VTKLRFEAIV CLLDRIPITL QQIDMFGQDV AFRTKRIGNI 60 EALLDFLKGS AAATWGARAG AGEPIDASSP ELHRLVEDAE TAYRDVRGLQ PRMVVQMPRV 120 FHKVCLPKLH QLLVIARRLL AQNVALRRLL LQEPVGCDVS PMALAEAAVS SDDFVRHGRN 180 KVVIDEFGYE DLLRRRHTGH ESQNDADDAE QHGREVREGE YEDLILMRHR DTSHELLQDD 240 ARRRRADAEA EQQGGDGEVR DEYEDYLCRQ LGAVYSGPDQ IYEHDMRGPE PAHSPNTPDQ 300 IYVPCERMLP YPSNCDNAED RIHMACLALK NLVKDMEGIY SPRGTLWQYL EDVISLAHAL 360 FLENTKLHRF TDQASHQDLP LQPPQGFPFQ QQPQHDGYQQ PGVPFQQPQQ GGYYGHGQGI 420 MFQRGGYLQD VPFQHWQWQQ GGYGQGFMFP QAQHQGGYGQ GFLSEQPLPG DPSFMNMQAP 480 YDGDGGVLFQ KPQHHHHGHV PSEKGAIQAK GKQKMREPKT VMCPDWCRTG HCSSGDGCEY 540 AHSQDELRVI DAGPKYRTSR AVTG

Sequence ? help Back to Top

Protein Sequence Length: 564 aa Download sequence

MKQEEDELAV DPGVGAVCDP VTKLRFEAIV CLLDRIPITL QQIDMFGQDV AFRTKRIGNI  60
EALLDFLKGS AAATWGARAG AGEPIDASSP ELHRLVEDAE TAYRDVRGLQ PRMVVQMPRV  120
FHKVCLPKLH QLLVIARRLL AQNVALRRLL LQEPVGCDVS PMALAEAAVS SDDFVRHGRN  180
KVVIDEFGYE DLLRRRHTGH ESQNDADDAE QHGREVREGE YEDLILMRHR DTSHELLQDD  240
ARRRRADAEA EQQGGDGEVR DEYEDYLCRQ LGAVYSGPDQ IYEHDMRGPE PAHSPNTPDQ  300
IYVPCERMLP YPSNCDNAED RIHMACLALK NLVKDMEGIY SPRGTLWQYL EDVISLAHAL  360
FLENTKLHRF TDQASHQDLP LQPPQGFPFQ QQPQHDGYQQ PGVPFQQPQQ GGYYGHGQGI  420
MFQRGGYLQD VPFQHWQWQQ GGYGQGFMFP QAQHQGGYGQ GFLSEQPLPG DPSFMNMQAP  480
YDGDGGVLFQ KPQHHHHGHV PSEKGAIQAK GKQKMREPKT VMCPDWCRTG HCSSGDGCEY  540
AHSQDELRVI DAGPKYRTSR AVTG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	4e-07	C3H family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G19960.1