PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G19740.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 365aa    MW: 38415 Da    PI: 6.7196
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G19740.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.7e-09185233355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  OGLUM08G19740.1 185 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKALMLDEIINYVQSLQ 233
                      58*************************9....556*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    
MDANGGNGFG VESNASAVHG GMAMAWQWHG GQMSGGSSCA AAPPPVQQPA MDSLAWSSTV  60
SPSTGAATAA SGAGFLLPPA AVRGGFGSFP VNSGGIVEPA GDCSSESKKR RSDEIAGTDH  120
ANASNALADS GNETECSKDA NGEVIGPPAT AAAGGKSKGK GAKDAGEAQK EGYSHVRARK  180
GQATNSHSLA ERLRREKISE RMKLLQDLVP GCSKVTGKAL MLDEIINYVQ SLQRQVEFLS  240
MKLSAVNPRI DLDIESLVNN SKDVLRFPGQ PSSAPMGFSF STEMMPGLQL SRPGILQGGV  300
HGMINPYVFT SLMQKQQQND KGAFREPQMH QTLDGSFRNT AQMPYPQVMS SEELSIRQDQ  360
DGFHM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26260.32e-47bHLH family protein