PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G18410.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GeBP

Protein Properties

Length: 453aa MW: 48519.4 Da PI: 10.5125

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G18410.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	100.1	2e-31	189	288	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifels 92 ++ r+w+ +De+++L++li+++ak+g+ +s+d+ ++++++++++s+k+s++ql++K+rrLK+K++ ++ +ksg++p++ +ehd++++els OGLUM08G18410.1 189 RPPRVWNPQDEVTILRALISYRAKNGAlpGSSQDTGKLHNMIRGQLSVKASTTQLSDKVRRLKHKYNLILTRvTKSGRDPDLPTEHDREVYELS 282 578**********************888999*********************************99899*************** PP DUF573 93 kkiWgs 98 kk+Wg+ OGLUM08G18410.1 283 KKVWGT 288 **95 PP

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence
MAPKRPAAAS GSASEASDGE AGGAGRRRSP SRSRSPSRSA SPSRSRSKTP PHNAAVLSST 60 PASAAVDFVA ASDSDAGADA DARLASPRRS RERSPRLHSD SDNSAAATAE AAEAAAAAAA 120 FDDGDDEGNA TPPPRSRRSS RVEATGVKPI SSRPMDASRR PAAASSQSQR RSKRPRSSPT 180 QHSPEQHKRP PRVWNPQDEV TILRALISYR AKNGALPGSS QDTGKLHNMI RGQLSVKAST 240 TQLSDKVRRL KHKYNLILTR VTKSGRDPDL PTEHDREVYE LSKKVWGTKS SGAGAGSGGG 300 GGGGRVYENA EVVQSDEEQG SRDDSDEDME SGWDDRDHRN RRLKAIVVAN GNGNAVTGGR 360 SVHGNGSGKG DVADKGKDMY PYLWEAVEEL SKEHPSGTAF RKAFGVLDGS RARAMEEKLN 420 RFRLSEIRQQ LRRMDLMKET IKMVLDALEG SDL

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence

MAPKRPAAAS GSASEASDGE AGGAGRRRSP SRSRSPSRSA SPSRSRSKTP PHNAAVLSST  60
PASAAVDFVA ASDSDAGADA DARLASPRRS RERSPRLHSD SDNSAAATAE AAEAAAAAAA  120
FDDGDDEGNA TPPPRSRRSS RVEATGVKPI SSRPMDASRR PAAASSQSQR RSKRPRSSPT  180
QHSPEQHKRP PRVWNPQDEV TILRALISYR AKNGALPGSS QDTGKLHNMI RGQLSVKAST  240
TQLSDKVRRL KHKYNLILTR VTKSGRDPDL PTEHDREVYE LSKKVWGTKS SGAGAGSGGG  300
GGGGRVYENA EVVQSDEEQG SRDDSDEDME SGWDDRDHRN RRLKAIVVAN GNGNAVTGGR  360
SVHGNGSGKG DVADKGKDMY PYLWEAVEEL SKEHPSGTAF RKAFGVLDGS RARAMEEKLN  420
RFRLSEIRQQ LRRMDLMKET IKMVLDALEG SDL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	1e-14	GeBP family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G18410.1