PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM08G16380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 266aa MW: 27741.3 Da PI: 5.652 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 111.8 | 9.5e-35 | 87 | 207 | 3 | 124 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaaksa 94 ++drhski T++g RdRR+Rls+ +a+ fF+Lqd+LGfdk+s t+eWLl+q+k+ai+ lt +s +a ++ ++++++a+++a OGLUM08G16380.1 87 FRTDRHSKIRTAQGVRDRRMRLSVGVARDFFALQDKLGFDKASRTVEWLLTQSKHAIDRLTLPDSADAAAApaF---AAAPPPADQHSSAMAAA 177 689**********************************************************9955555333221...11111122222334444 PP TCP 95 akskksqksaasalnlakesrakararare 124 a s ++k +as ++ + s+a+ar r ++ OGLUM08G16380.1 178 AASAAKEKGEASSSSTTNASSARARNRGHD 207 455555555555566777777777777554 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence |
MSAPSSSSSP STLDEYDARF FFPGADAYTA GHRQDEETLE AVLRQPVTTT AAVAAAAAAV 60 EGGGGGGGGG AGGSPAAAAA ATRRRPFRTD RHSKIRTAQG VRDRRMRLSV GVARDFFALQ 120 DKLGFDKASR TVEWLLTQSK HAIDRLTLPD SADAAAAPAF AAAPPPADQH SSAMAAAAAS 180 AAKEKGEASS SSTTNASSAR ARNRGHDGSS PVAPMDERGR RGVELDWTAA AAASTEQPMD 240 GLEYYFQYYN HLEEIMSCDP TTTTDE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.2 | 4e-24 | TCP family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM08G16380.1 |