PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G16000.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 461aa MW: 46709.6 Da PI: 7.5223

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G16000.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.6	5.1e-32	262	315	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ OGLUM08G16000.1 262 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 315 9****************************************************7 PP
2	Myb_DNA-binding	46.7	7.2e-15	263	314	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT ++ ++v+av++lGg+ t+k++ + m k +tl ++ks++q+y+ OGLUM08G16000.1 263 RMRWTSSLHARFVHAVELLGGHeraTPKSVLELMDvKDLTLAHVKSHLQMYR 314 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence
MASATSTTPD LSLHISLPSG GAAVGTTAPP GLGNGAAVGG AGGGKAAGGG DPWRRLDGST 60 ASTELSLSTP QQQQEGSTSA ADVLPWRLRQ PTAAAASVPV TLPTIPMDGS AAAARAPIRG 120 VPVYSGGGGG GHPFLGGGGG DHRHNRLYNP YHSTAWPSSS LCSTSPAPAP PPPPAALDPT 180 TSSLLSPSAY HRMLSSTGRL HGVLADTLRG YAGAAAVAGS IGYGSAAAAM GGYGGAGAGG 240 GFASSRFMPR LLPASRRSMR APRMRWTSSL HARFVHAVEL LGGHERATPK SVLELMDVKD 300 LTLAHVKSHL QMYRTVKSTD KPAAASGPMD GSGSGSGSGD DELLAGDGRQ ATSSGADADR 360 RMSFTEHRSS SEGAASHAGG GGDGDCSSSA VNSDTIRARS NSPRDLWLSS SVCNMDPQYL 420 VTVEDMEPCR SSSLQVSSHE LSSPSLEFTL GRPSWHSIDH D

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence

MASATSTTPD LSLHISLPSG GAAVGTTAPP GLGNGAAVGG AGGGKAAGGG DPWRRLDGST  60
ASTELSLSTP QQQQEGSTSA ADVLPWRLRQ PTAAAASVPV TLPTIPMDGS AAAARAPIRG  120
VPVYSGGGGG GHPFLGGGGG DHRHNRLYNP YHSTAWPSSS LCSTSPAPAP PPPPAALDPT  180
TSSLLSPSAY HRMLSSTGRL HGVLADTLRG YAGAAAVAGS IGYGSAAAAM GGYGGAGAGG  240
GFASSRFMPR LLPASRRSMR APRMRWTSSL HARFVHAVEL LGGHERATPK SVLELMDVKD  300
LTLAHVKSHL QMYRTVKSTD KPAAASGPMD GSGSGSGSGD DELLAGDGRQ ATSSGADADR  360
RMSFTEHRSS SEGAASHAGG GGDGDCSSSA VNSDTIRARS NSPRDLWLSS SVCNMDPQYL  420
VTVEDMEPCR SSSLQVSSHE LSSPSLEFTL GRPSWHSIDH D

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	42	50	GGGKAAGGG
2	43	51	GGGKAAGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16560.1	3e-30	G2-like family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G16000.1