PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G15030.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 278aa    MW: 29380.8 Da    PI: 7.7621
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G15030.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.5e-20103152255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa  +++a+ +l+g
  OGLUM08G15030.1 103 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALTYDQAAYRLRG 152
                      59******9.**********955...5*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    
MAAAIEGNLM RALGEAPSPQ MQKIAPPPFH PSLPPAPANF SSAGVHGFHY MGPAQLSPAQ  60
IQRVQAQLHM QRQAQSGLGP RAQPMKPASA AAPAAAAARA QKLYRGVRQR HWGKWVAEIR  120
LPRNRTRLWL GTFDTAEEAA LTYDQAAYRL RGDAARLNFP DNAASRGPLD AAVDAKLQAI  180
CDTIAASKNA SSRSRGGAGR AMPINAPLVA AASSSSGSDH SGGGDDGGSE TSSAAASPLA  240
EMEQLDFSEV PWDEAEGFAL TKYPSYEIDW DSLLNNNN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.14e-50ERF family protein