PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G14700.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 543aa MW: 57735.9 Da PI: 4.7688

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G14700.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.7	4.5e-39	88	186	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaCk++rrkC++dC++apyfpa+q+++f n+h+lFG+sn+lk+l++l++e +dam++l+y+Ae+ra+dPv G+++vi +l++qle ael OGLUM08G14700.1 88 ACAACKYQRRKCNPDCPMAPYFPADQQRRFLNAHRLFGVSNILKTLRHLKPELCDDAMRTLIYQAEMRAHDPVGGCCRVICDLERQLELDTAEL 181 7********************************************************************************************* PP DUF260 95 allke 99 +++ + OGLUM08G14700.1 182 NTVLH 186 98866 PP

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence
MTSTTTITTT NTTTTTTTTN NNNNPVSTTT TTASHQRQSL PVAARPPHSS SSGTGSGGSH 60 RGASGGGSGG GGGGGGGGGG GGGGTNQACA ACKYQRRKCN PDCPMAPYFP ADQQRRFLNA 120 HRLFGVSNIL KTLRHLKPEL CDDAMRTLIY QAEMRAHDPV GGCCRVICDL ERQLELDTAE 180 LNTVLHHLAM CRQAAAAGAS GSVAAALPAG VLDDACTDLD VTSSNQPLLL SAEQEVVDAL 240 YANQEADAAI LHAADGHHNQ DESQREHHHG QPQQLYDYFY YDSTAGDDVS SKPNLDINVD 300 GMQHFDFDTN YDAEHKVELT SDHQMPVGVD EHNQIDDKGF EIKSAPSLVD VFDLRQEEEQ 360 MQTVDVNTDI EVKEMVDMNA DIDVKTMVDE NSNIDIIKTM VDVNADIVDV VKTVVDVNGD 420 IGVKEELPEL ENGKIIADVT PGSGIHCARM AAGELLAAVP LLSAGDASFA GGGEAFRLGC 480 YRSSPAIAGS TTAMSGSALR RRCGRRRPLR REAAWWLWLV GCMAGAHEAS LLAGARWRGG 540 CDS

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence

MTSTTTITTT NTTTTTTTTN NNNNPVSTTT TTASHQRQSL PVAARPPHSS SSGTGSGGSH  60
RGASGGGSGG GGGGGGGGGG GGGGTNQACA ACKYQRRKCN PDCPMAPYFP ADQQRRFLNA  120
HRLFGVSNIL KTLRHLKPEL CDDAMRTLIY QAEMRAHDPV GGCCRVICDL ERQLELDTAE  180
LNTVLHHLAM CRQAAAAGAS GSVAAALPAG VLDDACTDLD VTSSNQPLLL SAEQEVVDAL  240
YANQEADAAI LHAADGHHNQ DESQREHHHG QPQQLYDYFY YDSTAGDDVS SKPNLDINVD  300
GMQHFDFDTN YDAEHKVELT SDHQMPVGVD EHNQIDDKGF EIKSAPSLVD VFDLRQEEEQ  360
MQTVDVNTDI EVKEMVDMNA DIDVKTMVDE NSNIDIIKTM VDVNADIVDV VKTVVDVNGD  420
IGVKEELPEL ENGKIIADVT PGSGIHCARM AAGELLAAVP LLSAGDASFA GGGEAFRLGC  480
YRSSPAIAGS TTAMSGSALR RRCGRRRPLR REAAWWLWLV GCMAGAHEAS LLAGARWRGG  540
CDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	2e-36	LBD family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G14700.1