PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G13570.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CPP

Protein Properties

Length: 598aa MW: 65663.1 Da PI: 8.4847

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G13570.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	37	7e-12	171	209	3	42
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 k +C+Ck skClk+YCeCf++g++C C+C++C+N+ ++ OGLUM08G13570.1 171 KTNCSCKYSKCLKLYCECFEKGRYCIG-CNCTNCCNNVNH 209 789**********************.******9875 PP
2	TCR	47.3	4.1e-15	252	292	1	41
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 k++kgC+Ck+++ClkkYCeCf+a ++Cse+C+C++CkN ++ OGLUM08G13570.1 252 KHTKGCKCKRTECLKKYCECFKASVFCSENCRCTGCKNYKS 292 589***********************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 598 aa Download sequence
MEKPLQLCPG SVKIDFASAS YAGKADIAAT AAALLHALGP PRTPPCYQLP LAKVNSSLPL 60 WSPVICPSTF AQKRPMSLPS PPPAKKLQVQ QSSSMLPQDF PKLEVLPVEK PTKLQVRRSP 120 QHVSPALKQD SPKMEKPLLP RPATFIDVML SSQKPSSEMW SETKDVTLTR KTNCSCKYSK 180 CLKLYCECFE KGRYCIGCNC TNCCNNVNHE NARQDAINVA LERNPAAFMP KVSNSTAHNC 240 ESKAAEGDIM GKHTKGCKCK RTECLKKYCE CFKASVFCSE NCRCTGCKNY KSNADRISQK 300 NTVHAHHVQN PASSGMVGQS VIIFHAAEND SSLSLAASVS DHSINNNTSH ALSCSLTSSV 360 TREDAKSLVK YVPHEVTYRP SLADIIQIED VNELCNLLIL VSRQAGATLL ESGMKENTKR 420 KKLNRVDSCL SSTNHDREAI QKEPAKQMCS LEKSSNEVLI AEGRLELPRA DPFDIQKGNK 480 RPLSPGTQAL MCDEQDAVFQ DSKAPDATPS TTEENLVDIF KEQEKRVLTN FRDYLCKLAT 540 CGKLQELKLS LASTNCSEQA FADHGNNSSI TRVAKVTRIR QTIPQFSSKA ASTTALDV

Sequence ? help Back to Top

Protein Sequence Length: 598 aa Download sequence

MEKPLQLCPG SVKIDFASAS YAGKADIAAT AAALLHALGP PRTPPCYQLP LAKVNSSLPL  60
WSPVICPSTF AQKRPMSLPS PPPAKKLQVQ QSSSMLPQDF PKLEVLPVEK PTKLQVRRSP  120
QHVSPALKQD SPKMEKPLLP RPATFIDVML SSQKPSSEMW SETKDVTLTR KTNCSCKYSK  180
CLKLYCECFE KGRYCIGCNC TNCCNNVNHE NARQDAINVA LERNPAAFMP KVSNSTAHNC  240
ESKAAEGDIM GKHTKGCKCK RTECLKKYCE CFKASVFCSE NCRCTGCKNY KSNADRISQK  300
NTVHAHHVQN PASSGMVGQS VIIFHAAEND SSLSLAASVS DHSINNNTSH ALSCSLTSSV  360
TREDAKSLVK YVPHEVTYRP SLADIIQIED VNELCNLLIL VSRQAGATLL ESGMKENTKR  420
KKLNRVDSCL SSTNHDREAI QKEPAKQMCS LEKSSNEVLI AEGRLELPRA DPFDIQKGNK  480
RPLSPGTQAL MCDEQDAVFQ DSKAPDATPS TTEENLVDIF KEQEKRVLTN FRDYLCKLAT  540
CGKLQELKLS LASTNCSEQA FADHGNNSSI TRVAKVTRIR QTIPQFSSKA ASTTALDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20110.2	2e-62	CPP family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G13570.1