PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G13110.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 299aa    MW: 32024.4 Da    PI: 9.0316
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G13110.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.73.9e-10117158550
              AP2   5 GVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaar 50 
                      GV+++   grW++  rd       + r +lg+f ++eeA++a++a+ 
  OGLUM08G13110.1 117 GVYQRQ-PGRWAVDFRD----SqLKVRQWLGTFPSEEEARAAYDAFE 158
                      9**998.9******888....23459*******************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MVAFRRIRIS YSDPDATDSD SDSDSADAGD HDISSRSSRT NAAARRKVIV ISLSRKKGRS  60
SSQSGRHYRR RRSEIPAAAA KAVEAEDWPS SSDGMRRGAV AAARSASAAA KKGSRGGVYQ  120
RQPGRWAVDF RDSQLKVRQW LGTFPSEEEA RAAYDAFEVQ VRASLSCGGA GAVAPSPARV  180
KIQLPAPRRV FGRRKKTQTT TTTTESSSQA TVSASPSSEA AALPSSSASA AMPPPLNPPP  240
FVVDPFLGED DHLAADDDRF GFGLADLGHL PLPFLDDNDM DFKLSDSDDL SSLFDIGFM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15572RKKGRSSSQSGRHYRRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-07ERF family protein