PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G10500.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 449aa MW: 47426.7 Da PI: 9.5008

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G10500.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	66.6	5.3e-21	105	225	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..................................lkkplWeevskkmrergferspkqCkekwenlnkr 60 +Wt+ +v++Li+++ +++++ + +kk++W++vs++m+e g +sp+qC++k+++lnkr OGLUM08G10500.1 105 KWTDGMVRLLINVVYSVGDDGDGVAaggaaggkasagaaghgkaggsgshgahgqaaaqQKKGKWKSVSRAMMESGHMVSPQQCEDKFNDLNKR 198 69999999999998855555443222233444455555555556666666666666666********************************* PP trihelix 61 ykkikegekkr.tsessstcpyfdqle 86 yk++ + +++ +++++++++++d ++ OGLUM08G10500.1 199 YKRVVDLLGRGkACKVVENHALLDAMD 225 *****9967**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence
MGPRGVVGSA AMLGLEMHLA HPQMHATAYQ QPDPHGGGGG GFQQQVAAVR QQQQQSYSPY 60 SAGASSRVIK APGHDDGMGN GAGKGGVVQQ QQQPGSAGCP WTRMKWTDGM VRLLINVVYS 120 VGDDGDGVAA GGAAGGKASA GAAGHGKAGG SGSHGAHGQA AAQQKKGKWK SVSRAMMESG 180 HMVSPQQCED KFNDLNKRYK RVVDLLGRGK ACKVVENHAL LDAMDELTHK AKDEARKLLS 240 SKHLFFREMC AYHNSGAAAA AAAHGPHGAG AAGRRRGDDV SSAGAGDDDD EDGVKRARGA 300 ASAAGGGDDE GPSAVQQLQS ELAAAVAGGG DPQQVRQWVR RRTVEVEEQQ VAHEVRAYHL 360 ERQRLKWERF RANKERDMER ARLRNDRLRI DGRRMLLLLR QKDLDFDIAE ANSSSVDHLT 420 SSAPPPLAAL QQQQQPLGSS PSTAAGHPN

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence

MGPRGVVGSA AMLGLEMHLA HPQMHATAYQ QPDPHGGGGG GFQQQVAAVR QQQQQSYSPY  60
SAGASSRVIK APGHDDGMGN GAGKGGVVQQ QQQPGSAGCP WTRMKWTDGM VRLLINVVYS  120
VGDDGDGVAA GGAAGGKASA GAAGHGKAGG SGSHGAHGQA AAQQKKGKWK SVSRAMMESG  180
HMVSPQQCED KFNDLNKRYK RVVDLLGRGK ACKVVENHAL LDAMDELTHK AKDEARKLLS  240
SKHLFFREMC AYHNSGAAAA AAAHGPHGAG AAGRRRGDDV SSAGAGDDDD EDGVKRARGA  300
ASAAGGGDDE GPSAVQQLQS ELAAAVAGGG DPQQVRQWVR RRTVEVEEQQ VAHEVRAYHL  360
ERQRLKWERF RANKERDMER ARLRNDRLRI DGRRMLLLLR QKDLDFDIAE ANSSSVDHLT  420
SSAPPPLAAL QQQQQPLGSS PSTAAGHPN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	4e-44	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G10500.1