PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G10220.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TALE

Protein Properties

Length: 375aa MW: 39896.4 Da PI: 5.3964

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G10220.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	23.6	8.6e-08	317	350	21	54
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + OGLUM08G10220.2 317 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 350 569*****************************87 PP
2	ELK	26.5	1.4e-09	271	292	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++L+++++E++ OGLUM08G10220.2 271 ELKHELKQGYKEKLIDIREEIL 292 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MAFHDHLPHE MTMQALGADD AAVAAAAAAG GVGAGGAPAW MRYNDGSFLH LQTTSDSSAS 60 PSGAAAAAAA AAAAAAAAGV QQWMGGGGGG EDAVAAAMGG GGEADAARCK AEILAHPLYE 120 QLLSAHVACL RIATPVDQLP RIDAQLAQSQ GVVAKYSALA AAAAGDDGRE LDQFMTHYVL 180 LLCSFKEQLQ QHVRVHAMEA VMACWELEQN LQSLTGASPG EGTGATMSDG EDDQADSEAN 240 MYDPSLDGAD NMGFGLPTES ERSLMERVRQ ELKHELKQGY KEKLIDIREE ILRKRRAGKL 300 PGDTTSTLKA WWQSHAKWPY PTEEDKARLV QETGLQLKQI NNWFINQRKR NWHSNPSSST 360 SVKTKRKSNA GDNNS

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MAFHDHLPHE MTMQALGADD AAVAAAAAAG GVGAGGAPAW MRYNDGSFLH LQTTSDSSAS  60
PSGAAAAAAA AAAAAAAAGV QQWMGGGGGG EDAVAAAMGG GGEADAARCK AEILAHPLYE  120
QLLSAHVACL RIATPVDQLP RIDAQLAQSQ GVVAKYSALA AAAAGDDGRE LDQFMTHYVL  180
LLCSFKEQLQ QHVRVHAMEA VMACWELEQN LQSLTGASPG EGTGATMSDG EDDQADSEAN  240
MYDPSLDGAD NMGFGLPTES ERSLMERVRQ ELKHELKQGY KEKLIDIREE ILRKRRAGKL  300
PGDTTSTLKA WWQSHAKWPY PTEEDKARLV QETGLQLKQI NNWFINQRKR NWHSNPSSST  360
SVKTKRKSNA GDNNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25220.1	1e-157	TALE family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G10220.2