PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G04530.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

AP2

Protein Properties

Length: 274aa MW: 29611.9 Da PI: 6.6917

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G04530.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	34.7	4.4e-11	78	134	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++ k++g+++A+++d s+ g krk + g++ t+e Aa+a++ a++k++g OGLUM08G04530.1 78 SRYHGVTRLKWSGKFEAHLWDnTSQvEGrKRKGKH-GSYVTEENAARAHDLAALKYWG 134 79*****************55558777778888.999999************98 PP
2	AP2	50.1	6.7e-16	179	233	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ngkr.krfslgkfgtaeeAakaaiaarkklege 56 s y+GV+++k +grW A+I e + k ++lg+f t+ eAa+a++ a+ +l+g+ OGLUM08G04530.1 179 SSYRGVTRRK-DGRWQARIGRIGEsR--DtKDIYLGTFETEIEAAEAYDLAAIELRGA 233 67***999.9**99953323..36******99***********995 PP

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence
MATVQPAASD PAPPPPPETE EQPAAAGGEE IAALDEQLAV ADGGGDDGKA AAAAEGGGGG 60 GGKLVAETMR KYAAPRSSRY HGVTRLKWSG KFEAHLWDNT SQVEGRKRKG KHGSYVTEEN 120 AARAHDLAAL KYWGAGPNTK LNFNVSDYEK EIERMKTMSQ DEFVVYIRRQ SSCFSRGTSS 180 YRGVTRRKDG RWQARIGRIG ESRDTKDIYL GTFETEIEAA EAYDLAAIEL RGAHAVTNFD 240 ISNYCEDGLK KLEASSEVPK LLEGPSKAAK LAGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	4e-66	AP2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G04530.1