PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM08G04040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 192aa MW: 21011.2 Da PI: 4.3582 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 102.9 | 2.9e-32 | 14 | 119 | 1 | 100 |
DUF260 1 aCaaCkvlrr.kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer.....edamsslvyeAearardPvyGavgvilklqqqle 88 aCaaC++++ +C+++C lapyfpa++pk+f++++ +FG++++l + +a ++ r + m+++vy A+ar++dP+ Ga+g i+klqqql+ OGLUM08G04040.1 14 ACAACAHQGAsSCPPNCGLAPYFPADKPKRFWYARLMFGMERILGFSEAEKQGIRpngstVISMAAVVYLADARVEDPILGAYGRIRKLQQQLD 107 7********999************************************976555666666899******************************* PP DUF260 89 qlkaelallkee 100 +lkae a+++++ OGLUM08G04040.1 108 RLKAERARQHHP 119 *******99986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence |
MASPSPPTTT TQQACAACAH QGASSCPPNC GLAPYFPADK PKRFWYARLM FGMERILGFS 60 EAEKQGIRPN GSTVISMAAV VYLADARVED PILGAYGRIR KLQQQLDRLK AERARQHHPA 120 TASPAPADNV ALEPEPEPFH QPPAQPSTPP ALAIPDEDEE EEEDDDDDED EEEEGHAPVD 180 DDVPCAKRRR TN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 4e-13 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM08G04040.1 |