PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G03720.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 370aa    MW: 38128.9 Da    PI: 7.2569
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G03720.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH314.4e-1088113127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+lC+ f++ GtC+y  +C+FaHg+
  OGLUM08G03720.1  88 FKTKLCCKFRA-GTCPYVTNCNFAHGM 113
                      69*********.*************95 PP

2zf-CCCH17.95.4e-06173198126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      yk + C+ f+    C+yGd C+F H+
  OGLUM08G03720.1 173 YKGRHCKKFYTDEGCPYGDACTFLHD 198
                      77888********************7 PP

3zf-CCCH43.35.9e-14249274126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +kt++C+ +  tG+C++G++C+FaHg
  OGLUM08G03720.1 249 WKTRICNKWEMTGYCPFGSKCHFAHG 274
                      8************************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    
MDYTNAIHII PDAAGPDAWA NAAAQGGDAG IWATEDDYNS QWNADGGGGG SSRAGSEQPP  60
PGKKSRGGGG GEGGGNTSKS RAIGKMFFKT KLCCKFRAGT CPYVTNCNFA HGMEELRKPP  120
PNWQEIVAAH EEATEAREEH QIPIMTSSGP TAGGDAGCGG GGGGGGGGSG RAYKGRHCKK  180
FYTDEGCPYG DACTFLHDEQ SKARESVAIS LSPSVGGGGG GGSYNSAAAA AASASAAAGN  240
GPMQKPSNWK TRICNKWEMT GYCPFGSKCH FAHGAAELHK YGGGLVDIDS RDAAATPDSK  300
QAVVSAKAPA ETAAASTTVL PHADVYHLGV QAQRSTIAGQ RSGQVQRPIQ KWKGPDKISR  360
IYGDWIDETE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.13e-93C3H family protein