PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM08G03720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 370aa MW: 38128.9 Da PI: 7.2569 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31 | 4.4e-10 | 88 | 113 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ f++ GtC+y +C+FaHg+ OGLUM08G03720.1 88 FKTKLCCKFRA-GTCPYVTNCNFAHGM 113 69*********.*************95 PP | |||||||
2 | zf-CCCH | 17.9 | 5.4e-06 | 173 | 198 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd C+F H+ OGLUM08G03720.1 173 YKGRHCKKFYTDEGCPYGDACTFLHD 198 77888********************7 PP | |||||||
3 | zf-CCCH | 43.3 | 5.9e-14 | 249 | 274 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg OGLUM08G03720.1 249 WKTRICNKWEMTGYCPFGSKCHFAHG 274 8************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence |
MDYTNAIHII PDAAGPDAWA NAAAQGGDAG IWATEDDYNS QWNADGGGGG SSRAGSEQPP 60 PGKKSRGGGG GEGGGNTSKS RAIGKMFFKT KLCCKFRAGT CPYVTNCNFA HGMEELRKPP 120 PNWQEIVAAH EEATEAREEH QIPIMTSSGP TAGGDAGCGG GGGGGGGGSG RAYKGRHCKK 180 FYTDEGCPYG DACTFLHDEQ SKARESVAIS LSPSVGGGGG GGSYNSAAAA AASASAAAGN 240 GPMQKPSNWK TRICNKWEMT GYCPFGSKCH FAHGAAELHK YGGGLVDIDS RDAAATPDSK 300 QAVVSAKAPA ETAAASTTVL PHADVYHLGV QAQRSTIAGQ RSGQVQRPIQ KWKGPDKISR 360 IYGDWIDETE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 3e-93 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM08G03720.1 |