PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G03690.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LSD

Protein Properties

Length: 175aa MW: 18064 Da PI: 7.6708

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G03690.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	43.7	4.4e-14	59	83	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP+GA+sV+Ca+C tV OGLUM08G03690.2 59 CSGCRNLLMYPAGATSVCCAVCSTV 83 ***********************99 PP
2	zf-LSD1	46.4	6.4e-15	98	122	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV OGLUM08G03690.2 98 CGGCHTLLMYIRGATSVQCSCCHTV 122 ************************9 PP
3	zf-LSD1	41.5	2.2e-13	136	160	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V OGLUM08G03690.2 136 CGNCRMLLMYQYGARSVKCAVCNFV 160 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence
MTERKGDFSC LTAARICEAS TSDAVIQAAG TAMPVPLAPY PTPPVPFTPP NGAQSQLVCS 60 GCRNLLMYPA GATSVCCAVC STVTAVPAPG TEMAQLVCGG CHTLLMYIRG ATSVQCSCCH 120 TVNLAMEANQ VAHVNCGNCR MLLMYQYGAR SVKCAVCNFV TSVGASPGTD QKPSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	4e-61	LSD family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G03690.2