PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G03540.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 732aa MW: 80978.2 Da PI: 4.426

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G03540.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.4	2.3e-52	9	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lp GfrFhPtdeelv +yLk k++g+ +++evi+e+d++k+ePwdLp k +++++ ew+fF+++d+ky++g+r+nrat++gyWkatgkd+ + OGLUM08G03540.2 9 LPLGFRFHPTDEELVRHYLKGKITGQIRSEAEVIPEIDVCKCEPWDLPdKsLIRSDDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKDRVI 102 699**********************99999***********96446677888******************************** PP NAM 93 lsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 sk k++++g+kktLvf++grapkge+t W+mheyr OGLUM08G03540.2 103 RSKgdkkKQQVIGMKKTLVFHRGRAPKGERTGWIMHEYRT 142 988777777***************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 732 aa Download sequence
MAVMELKKLP LGFRFHPTDE ELVRHYLKGK ITGQIRSEAE VIPEIDVCKC EPWDLPDKSL 60 IRSDDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR VIRSKGDKKK QQVIGMKKTL 120 VFHRGRAPKG ERTGWIMHEY RTTEPEFESG EQGGYVLYRL FRKQEEKIER PSPDEVDRSG 180 YSPTPSRSTP DNMEPIEDGN TPLNRESPES ALHESPIDLP ALTEAQAAPI TRWLADRTDN 240 ATTNEVNISH MPHHGLDGGA KASPSAGAFP QLIGSQQNIH DNNELATVSA PMLPHEDFNN 300 FPLGAIGNFD GNMNPRDPVE EFLNQTIADP DEHSSTTSKA QYDSDTGIIP TEFENHGVMQ 360 GEFMDDLSGL ENLDFWPDDR NPQLSALYED TLLLHSTDQD VLSMDSGAES LQDLFNSMDD 420 SNARNNVWGN EPFLQGTGFP MSWPLQPNSA FPNQGTANKR LMLQLSESLS PDFDASMTRD 480 ECEDEEPGIV VTSKYVNEAP EESTAEKDMP SDGDDAEPTG ITILRRRHAP TASSFSDGDD 540 AESTGITILR QHQAPNASLL SDGDDAESTG ITILRRRQAP TASSASSFTQ QGAAVRRVRL 600 QSNLDAAPCS SVDGSSSCII NEGESERTME KPEIEENAGS TLAEGGTCHE DDQKEHDASA 660 ANAKSVLRLR KTAEGSDKEN KQEEEEGVLD SHVRAPGNKR GFPWYIIWLV LSVALVLLIS 720 LGIYGWDTLK ES

Sequence ? help Back to Top

Protein Sequence Length: 732 aa Download sequence

MAVMELKKLP LGFRFHPTDE ELVRHYLKGK ITGQIRSEAE VIPEIDVCKC EPWDLPDKSL  60
IRSDDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR VIRSKGDKKK QQVIGMKKTL  120
VFHRGRAPKG ERTGWIMHEY RTTEPEFESG EQGGYVLYRL FRKQEEKIER PSPDEVDRSG  180
YSPTPSRSTP DNMEPIEDGN TPLNRESPES ALHESPIDLP ALTEAQAAPI TRWLADRTDN  240
ATTNEVNISH MPHHGLDGGA KASPSAGAFP QLIGSQQNIH DNNELATVSA PMLPHEDFNN  300
FPLGAIGNFD GNMNPRDPVE EFLNQTIADP DEHSSTTSKA QYDSDTGIIP TEFENHGVMQ  360
GEFMDDLSGL ENLDFWPDDR NPQLSALYED TLLLHSTDQD VLSMDSGAES LQDLFNSMDD  420
SNARNNVWGN EPFLQGTGFP MSWPLQPNSA FPNQGTANKR LMLQLSESLS PDFDASMTRD  480
ECEDEEPGIV VTSKYVNEAP EESTAEKDMP SDGDDAEPTG ITILRRRHAP TASSFSDGDD  540
AESTGITILR QHQAPNASLL SDGDDAESTG ITILRRRQAP TASSASSFTQ QGAAVRRVRL  600
QSNLDAAPCS SVDGSSSCII NEGESERTME KPEIEENAGS TLAEGGTCHE DDQKEHDASA  660
ANAKSVLRLR KTAEGSDKEN KQEEEEGVLD SHVRAPGNKR GFPWYIIWLV LSVALVLLIS  720
LGIYGWDTLK ES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33060.1	4e-70	NAC family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G03540.2