PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G03520.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 290aa MW: 30933.2 Da PI: 4.8026

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G03520.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	86.2	2.8e-27	71	160	1	92
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+kv tpsdv+k++rlv+pk++ae++ + +++l +ed+ g W+++++y+++s++yv+tkGW++Fv+a +L +gD+v F++ ++++ OGLUM08G03520.1 71 FDKVVTPSDVGKLNRLVVPKQHAERFFPAAAAGTQLCFEDRAGTPWRFRYSYWGSSQSYVMTKGWSRFVRAARLSAGDTVSFSRA--ADGRY 160 89**********************666678889**********************************************43..45544 PP

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence
MYMDLTLGGA LLQVEEATEE EEEEEEEEQA LGQEPAPAAA AAALVLGRRH GVVVGGGGGG 60 VVVAAEREHM FDKVVTPSDV GKLNRLVVPK QHAERFFPAA AAGTQLCFED RAGTPWRFRY 120 SYWGSSQSYV MTKGWSRFVR AARLSAGDTV SFSRAADGRY FIDYRHCHRH GGRDISFASA 180 ATAMPAAAAA AWPLFGRVQT AAPVSYGGGH GSAAAATMFL DTVAPVAAAG GHRGEVGPSG 240 QRSFRLFGVN VECGGDVDAA AEEEDADDDV DDGDHRRGEE MELVMWTNHR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61970.1	2e-46	B3 family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G03520.1