PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G02240.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 787aa    MW: 84547 Da    PI: 6.3334
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G02240.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.76.3e-21115170156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t++q++eLe++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  OGLUM08G02240.1 115 KKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 170
                      688999***********************************************999 PP
2START203.11.2e-632915171206
                      HHHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
            START   1 elaeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                      ela +a++elv++a+++ep+W      e ++++e+ ++f+++ +      ++ea+r+++vv+m+++ lve l+d++ qW+  +     +a+tle
  OGLUM08G02240.1 291 ELAVAAMEELVRMAQLGEPLWAPALggEALDEEEYARTFPRGLGpkspeLRSEASRETAVVIMNHVSLVEMLMDVG-QWTALFSsivsRAATLE 383
                      57899**********************************99888********************************.99999999999****** PP

                      EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EE.SSEEEEEEEECTCEEEEEE CS
            START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRael.lpSgiliepksnghskvtw 166
                      v+s+g      galqlm+ae+q++splvp R+  f+Ry++q+++g+w++vdvS+d  +       ++  +R+++ +pSg+li++++ng+skvtw
  OGLUM08G02240.1 384 VLSTGvagnhnGALQLMSAEFQMPSPLVPtRETQFLRYCKQHPDGTWAVVDVSLDGLRAGAGggcQPAAARGHRrRPSGCLIQEMPNGYSKVTW 477
                      ************************************************************9999********8537****************** PP

                      EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      vehv+ +++++h+l++++v+sg+a+ga++wvatl+rqce+
  OGLUM08G02240.1 478 VEHVEADDQMVHNLYKPVVNSGMAFGARRWVATLERQCER 517
                      **************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    
MSPAMIGRPN GGGGVAYASS SSALSLGQSL LDGHHHQLPS LLQQHHNGHH LLDQHQQHQH  60
QLPPQATTTS ESDGRAPRDE LEMSKSGGSD NLESGGGGGG GGSGDDQDPN QRPRKKRYHR  120
HTQHQIQELE AFFKECPHPD DKQRKELSRE LGLEPLQVKF WFQNKRTQMK TQHERHENNA  180
LRAENEKLRA ENMRYKEALA NASCPNCGGP AAIGEMSFDE HHLRLENARL RDEIDRISAI  240
AAKYVGKPAA AVSAAYPPLP PSNRSPLDHM GIPGAGADVF GADFDKPLVI ELAVAAMEEL  300
VRMAQLGEPL WAPALGGEAL DEEEYARTFP RGLGPKSPEL RSEASRETAV VIMNHVSLVE  360
MLMDVGQWTA LFSSIVSRAA TLEVLSTGVA GNHNGALQLM SAEFQMPSPL VPTRETQFLR  420
YCKQHPDGTW AVVDVSLDGL RAGAGGGCQP AAARGHRRRP SGCLIQEMPN GYSKVTWVEH  480
VEADDQMVHN LYKPVVNSGM AFGARRWVAT LERQCERLAS AMASNVASSG DAGVITTSEG  540
RRSMLKLAER MVASFCGGVT ASTTHQWTTL SGSGAEDVRV MTRKSVDDPG RPPGIILNAA  600
TSFWLPVPPS RVFDFLRDDS TRSEWDILSN GGVVQEMAHI ANGRDHGNAV SLLRVNNANS  660
NQSNMLILQE CCTDATGSYV IYAPVDVVAM NVVLNGGDPD YVALLPSGFA ILPDGPDGGG  720
GSLLTVAFQI LVDSVPTAKL SLGSVATVNS LIACTVERIK AAITGDNGVA PPCPRGSREG  780
SRANSEV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein