PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM08G02000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LSD | ||||||||
Protein Properties | Length: 106aa MW: 11619.4 Da PI: 9.2597 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 28.5 | 2.6e-09 | 6 | 28 | 1 | 23 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23 C+gC tlL Y rGA+++RC++C+ OGLUM08G02000.1 6 CSGCPTLLFYNRGASNIRCPSCN 28 **********************8 PP | |||||||
2 | zf-LSD1 | 33.2 | 8.4e-11 | 44 | 68 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+ P+GA+ V+Ca C V OGLUM08G02000.1 44 CGQCRTTLMHPPGASTVQCATCRYV 68 **********************876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence |
MSELICSGCP TLLFYNRGAS NIRCPSCNRL NSTRSANQIA HLTCGQCRTT LMHPPGASTV 60 QCATCRYVNH VRDARPQTVL VENPKTLDDK GKLVSNVVVG VTSWKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.1 | 9e-29 | LSD family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM08G02000.1 |