PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G27460.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 403aa MW: 44013.3 Da PI: 7.1724

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G27460.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.9	3.6e-11	348	397	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r++W++ ++ l+++v+++G+g+Wk I + + R+ ++k++++++ OGLUM07G27460.2 348 RKKWSEKQEKTLLEGVEKYGKGNWKDIKMAYPdvfEDRSTVDLKDKFRNL 397 789*********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence
MTPADAFLIL DFLAGNRLIP HSVFTTLLAS LPSVSPHTSP RLRAGLALRA LDSALSISES 60 SEMDAPTLLR KARAVLADPD LAPFFPQHLA APASADDAPA AAVAHLNRLL DVEWASLPPS 120 SLEIAAERIV GSQALHSWAN ADHAQRSKLR LLAEKYSTSL YQFYSPLAVS AVGESTALEI 180 LDTLQRPDAS TNHPGTLPQV DNAPETNSAS HCAQQNDGAK SGLVKQNAEA DRPQQDSTRH 240 QQDSVQGASN SQLKESSVTM ESIRGTGPDI TGFMEEATPR VARQFAPDNI KNHQVTGSKR 300 SLMERNPTAS TYEWDGSDSE GKRPAAKRRL PIFERTAKPS PTAAHKTRKK WSEKQEKTLL 360 EGVEKYGKGN WKDIKMAYPD VFEDRSTVDL KDKFRNLERH LCA

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence

MTPADAFLIL DFLAGNRLIP HSVFTTLLAS LPSVSPHTSP RLRAGLALRA LDSALSISES  60
SEMDAPTLLR KARAVLADPD LAPFFPQHLA APASADDAPA AAVAHLNRLL DVEWASLPPS  120
SLEIAAERIV GSQALHSWAN ADHAQRSKLR LLAEKYSTSL YQFYSPLAVS AVGESTALEI  180
LDTLQRPDAS TNHPGTLPQV DNAPETNSAS HCAQQNDGAK SGLVKQNAEA DRPQQDSTRH  240
QQDSVQGASN SQLKESSVTM ESIRGTGPDI TGFMEEATPR VARQFAPDNI KNHQVTGSKR  300
SLMERNPTAS TYEWDGSDSE GKRPAAKRRL PIFERTAKPS PTAAHKTRKK WSEKQEKTLL  360
EGVEKYGKGN WKDIKMAYPD VFEDRSTVDL KDKFRNLERH LCA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G15720.1	2e-11	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OGLUM07G27460.2