PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G22980.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 569aa MW: 63185.4 Da PI: 4.4126

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G22980.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.9	3.6e-11	32	107	3	48
SS-HHHHHHHHHHHHHTTTT...............................-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...............................tWktIartmgkgRtlkqcksrwqkyl 48 +W+teEd+ l ++++G++ +W+ Ia+ + +t+ qc+ rw++yl OGLUM07G22980.2 32 SWSTEEDDVLRTQIALHGTDkyeffplpisidfffldlitifytvfpfpfgSWTIIAAQFK-DKTARQCRRRWYNYL 107 6*********************************************************9.************7 PP
2	Myb_DNA-binding	41.5	3e-13	113	156	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g W+ eEd+ll +a k lG++ W+ Ia+ + gRt++ +k+r+ + OGLUM07G22980.2 113 KGGWSREEDLLLCEAQKVLGNK-WTEIAKVVS-GRTDNAVKNRFST 156 688*****************.*****.********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 569 aa Download sequence
MATGPDLTPP AAAASAEAPS ASAAKKDRHI VSWSTEEDDV LRTQIALHGT DKYEFFPLPI 60 SIDFFFLDLI TIFYTVFPFP FGSWTIIAAQ FKDKTARQCR RRWYNYLNSE CKKGGWSREE 120 DLLLCEAQKV LGNKWTEIAK VVSGRTDNAV KNRFSTLCKR RAKDDELFKE NGSLCSSTSA 180 KRALAQTGCL TSGASGSAPP IKQMRPCNSD FKENMTPNMR LVGQDKSTQD SRQPLAIVYQ 240 NNQDNMNTMD TQNLVAKTAA KQLLAGEQNC VKHEGNFLNK DDPKIATLLQ RADLLCSLAT 300 KINTENTSQS MDEAWQQLQH HLDKKDDNDM SESSMSGMAS LLEDLDDLIV DPYENEEEED 360 QDLREQTEQI DVENKQNSSQ TSMEVTSQMV PDNKMEDCPN DKSTEDNNME PCPGEDIPTS 420 ENLTEAAIED SLLQCVEYSS PVHTVIQAKT DAEIAASENL SEVLEHNRLQ CIQLASPAQT 480 TTPVEANAET PASEKLSEVV KCNNPSCIEF TSPAHTVPTF LPYADDMPTP KFTASERNFL 540 LSVLELTSPG SRPDTSQQPS CKRALLNSL

Sequence ? help Back to Top

Protein Sequence Length: 569 aa Download sequence

MATGPDLTPP AAAASAEAPS ASAAKKDRHI VSWSTEEDDV LRTQIALHGT DKYEFFPLPI  60
SIDFFFLDLI TIFYTVFPFP FGSWTIIAAQ FKDKTARQCR RRWYNYLNSE CKKGGWSREE  120
DLLLCEAQKV LGNKWTEIAK VVSGRTDNAV KNRFSTLCKR RAKDDELFKE NGSLCSSTSA  180
KRALAQTGCL TSGASGSAPP IKQMRPCNSD FKENMTPNMR LVGQDKSTQD SRQPLAIVYQ  240
NNQDNMNTMD TQNLVAKTAA KQLLAGEQNC VKHEGNFLNK DDPKIATLLQ RADLLCSLAT  300
KINTENTSQS MDEAWQQLQH HLDKKDDNDM SESSMSGMAS LLEDLDDLIV DPYENEEEED  360
QDLREQTEQI DVENKQNSSQ TSMEVTSQMV PDNKMEDCPN DKSTEDNNME PCPGEDIPTS  420
ENLTEAAIED SLLQCVEYSS PVHTVIQAKT DAEIAASENL SEVLEHNRLQ CIQLASPAQT  480
TTPVEANAET PASEKLSEVV KCNNPSCIEF TSPAHTVPTF LPYADDMPTP KFTASERNFL  540
LSVLELTSPG SRPDTSQQPS CKRALLNSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14350.1	3e-76	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM07G22980.2