PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G21410.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 321aa    MW: 36405.2 Da    PI: 9.7722
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G21410.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF983.9e-311059251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rienk+nrqvtfskRrng+lKKA+E+SvLCda+va+i+fs++gklye+ss
  OGLUM07G21410.1 10 RIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSS 59
                     8***********************************************96 PP
2K-box935.1e-31841701096
            K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                      +++++e++  e+  Lk++++ Lq++qR+llGe+L++L+ keLqqLe+qLe slk+iRskKn+ll+e+i+elqkkek+l+++n+ L+k
  OGLUM07G21410.1  84 NTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTTKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQK 170
                      467789*****************************************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MGRGPVQLRR IENKINRQVT FSKRRNGLLK KAHEISVLCD ADVALIVFST KGKLYEFSSH  60
SSMEGILERY QRYSFDERAV LEPNTEDQEN WGDEYGILKS KLDALQKSQR QLLGEQLDTL  120
TTKELQQLEH QLEYSLKHIR SKKNQLLFES ISELQKKEKS LKNQNNVLQK FTTKAVLEVK  180
PFCLHSSEQL METEKEKNNA IINTNREEQN GATPSTSSPT PVTAPDPIPT TNNRLPLSIT  240
SKPTKRIRGV RSSTVSGTSR QQQASAMDAP DKSHMKASVD LKRHSTQWPT STCFFQLRQP  300
PLCNPSSSDI DISAFGIANI Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.15e-75MIKC_MADS family protein