PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G20830.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 379aa MW: 41913.5 Da PI: 6.4337

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G20830.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.2	4.7e-30	117	173	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK vkg e+p+sYY+Ct+ +C v+k+ve+sa d+++v+i+Y+g+H+he OGLUM07G20830.1 117 DDGYNWRKYGQKAVKGGEYPKSYYKCTHLNCLVRKNVEHSA-DGRIVQIIYRGQHTHE 173 8**************************************.*************8 PP
2	WRKY	103.5	1.2e-32	285	343	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gC vkk+vers e+p++v++tYeg+H h+ OGLUM07G20830.1 285 LDDGYRWRKYGQKVVKGNPYPRSYYKCTYLGCDVKKQVERSVEEPNAVITTYEGKHIHD 343 59*******************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MWFMDSANIA PHFADNGTRL FSVQGNFETF PQQDLVPLTA QEVHSKCITF GRAENLSFIP 60 LATSALVSQH TGSSSVNVTP LQEILTSPSQ ISNVNTESIG VLQGLPASSI VLDRPTDDGY 120 NWRKYGQKAV KGGEYPKSYY KCTHLNCLVR KNVEHSADGR IVQIIYRGQH THERPSKRRF 180 KDCGGISDDL DDFSGTTGTS VRSQPDYDDY CRKPIIPSGT MVAPLVKKIE DGDDQLSGSS 240 DNQDEHDDEV RTADGASGDA SANERNVPAP GQKIIVSTTS EIDLLDDGYR WRKYGQKVVK 300 GNPYPRSYYK CTYLGCDVKK QVERSVEEPN AVITTYEGKH IHDVPAARNK SHVVANASLL 360 QNTKSNTYCT EQSYTTITC

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MWFMDSANIA PHFADNGTRL FSVQGNFETF PQQDLVPLTA QEVHSKCITF GRAENLSFIP  60
LATSALVSQH TGSSSVNVTP LQEILTSPSQ ISNVNTESIG VLQGLPASSI VLDRPTDDGY  120
NWRKYGQKAV KGGEYPKSYY KCTHLNCLVR KNVEHSADGR IVQIIYRGQH THERPSKRRF  180
KDCGGISDDL DDFSGTTGTS VRSQPDYDDY CRKPIIPSGT MVAPLVKKIE DGDDQLSGSS  240
DNQDEHDDEV RTADGASGDA SANERNVPAP GQKIIVSTTS EIDLLDDGYR WRKYGQKVVK  300
GNPYPRSYYK CTYLGCDVKK QVERSVEEPN AVITTYEGKH IHDVPAARNK SHVVANASLL  360
QNTKSNTYCT EQSYTTITC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03340.1	7e-78	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM07G20830.1