PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G14590.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 585aa MW: 67201.8 Da PI: 6.5767

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G14590.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.3	3e-09	42	67	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+++ ++G Ck+G +C ++H+ OGLUM07G14590.1 42 PGEPDCSYYVKFGSCKFGISCVYNHP 67 5789*********************9 PP
2	zf-CCCH	28.6	2.4e-09	87	112	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+++ ++G Ck+G +C+F+H+ OGLUM07G14590.1 87 PGEPDCSYYVKFGSCKFGMNCRFNHP 112 5789*********************9 PP
3	zf-CCCH	32.6	1.3e-10	157	178	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 lC++++ G+Ck+G +CkF H+ OGLUM07G14590.1 157 LCSYYMNRGICKFGTNCKFDHP 178 8********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 585 aa Download sequence
MPQDDDWFWA PTPVVVGETT SKPQPPVAGK TKKVEEQHPR RPGEPDCSYY VKFGSCKFGI 60 SCVYNHPDPR RQHGADDKKP EQFPRRPGEP DCSYYVKFGS CKFGMNCRFN HPTRMPVPPQ 120 EYFPGNACHC HHSEGKSKVE QVNLNVLGLP LRAGTWLCSY YMNRGICKFG TNCKFDHPDP 180 GSDHEKWVVS SNANQVSSQV NIYSVLDHEE SNEHTFTSEE VHQPRNPSFH KRISYTRDQL 240 LQLGQNVEVP KDILKFCQDT NVELNGEDKI SGFGAEKDHV QTPSYKRFDA IDSRDWHSRS 300 AQTNWEQKFW DKFSEAKQLY AISWKQEKFN KPDQSSFHFD SKVQDDPISV LVKAEVPLSI 360 QRGIISGKDE DVINLIFEMV VAEPAFCSMY AQLCTYLNQN LTPFPPEDCD CEEITFKQAL 420 LNKCQEIFES AHTVRAEIDK LIGQDREMEQ PDKERVVKLE TLGNIHFIRA LQKKKLITNK 480 IIDHIVQAVM DCGKFRFEPL GKVDLLNIIF EGMLDSDSAG AESNICVNVM IGGNKSSIAA 540 NDVEMTRKNW HRIQRYDTKC HYQTRLYPMS ENQLENTNSH QKLFI

Sequence ? help Back to Top

Protein Sequence Length: 585 aa Download sequence

MPQDDDWFWA PTPVVVGETT SKPQPPVAGK TKKVEEQHPR RPGEPDCSYY VKFGSCKFGI  60
SCVYNHPDPR RQHGADDKKP EQFPRRPGEP DCSYYVKFGS CKFGMNCRFN HPTRMPVPPQ  120
EYFPGNACHC HHSEGKSKVE QVNLNVLGLP LRAGTWLCSY YMNRGICKFG TNCKFDHPDP  180
GSDHEKWVVS SNANQVSSQV NIYSVLDHEE SNEHTFTSEE VHQPRNPSFH KRISYTRDQL  240
LQLGQNVEVP KDILKFCQDT NVELNGEDKI SGFGAEKDHV QTPSYKRFDA IDSRDWHSRS  300
AQTNWEQKFW DKFSEAKQLY AISWKQEKFN KPDQSSFHFD SKVQDDPISV LVKAEVPLSI  360
QRGIISGKDE DVINLIFEMV VAEPAFCSMY AQLCTYLNQN LTPFPPEDCD CEEITFKQAL  420
LNKCQEIFES AHTVRAEIDK LIGQDREMEQ PDKERVVKLE TLGNIHFIRA LQKKKLITNK  480
IIDHIVQAVM DCGKFRFEPL GKVDLLNIIF EGMLDSDSAG AESNICVNVM IGGNKSSIAA  540
NDVEMTRKNW HRIQRYDTKC HYQTRLYPMS ENQLENTNSH QKLFI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	3e-33	C3H family protein

Link Out ? help Back to Top
Ensembl	OGLUM07G14590.1