PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G14320.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 1198aa MW: 128260 Da PI: 6.6847

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G14320.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.5	3.5e-06	1139	1163	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k +lC ++++ G+C+ G+ C+ aHg OGLUM07G14320.1 1139 KARLCERWMQDGECPNGNGCHDAHG 1163 669*****************98887 PP

Sequence ? help Back to Top
Protein Sequence Length: 1198 aa Download sequence
MAGDDADRNR PGRGRESLPG GATSSSSPPC SNFDGLNAQA ATSIPAAFGS GPTTTTTGGG 60 DSPGDSSRIA SHLVELEDTR RSADFVPSRH DAIYVPSGRP NPLRPIGHRE DYYSGSGSAT 120 AFFPISRDPV HVPISRDIAL PPIGHPSQGR LKSGSSSASA GDDMINSSAA VSHSTGAGGG 180 FSSRHAPASD EAKKQQRAMA IRRQQQQQQQ LQLAMEIWRQ QQQQLAAAMW QEQQQQEDEM 240 AIRKQQKQDR SMVFWQQLRA MTPSSASSSS SSSSAAVADN LAPSAAAAAE GSPSPTTPTT 300 GADQKNVGGD NDADYRRLPE HMSTTNDEAT TSSTSSSPPS ELLDALDTVA KAVGDAVRFA 360 FKMDPKTTFL AHGLADFVAS AAARDALSPI FAKLAAAAAA QYNGADHRGA GFAATQQIIP 420 ISARLFVFGV SKKRTTELDL RRHFKRYGYV ADIWLRRRGG YAFLYIEIAQ PKLPVERPMA 480 KYLCQRVCPV DNSLVRIGDR VLSTLALLGN YYKASDYITN LRRYGFMEGN MLMFDSVVDY 540 ISEDCQRCSV SSVVKKSDAN KPAVHYGNNI SSTTPSVGDD ATAKFCRYCL QFVAPGDSSN 600 CGELIHNDSS LIYQESFRRF NYGLKINDKW FPVGAFVGDM SSAEAEELEN FYRPLSICRL 660 KDDQIGLAGR MMFGSGAAAG TVATTRSLAL AAPVPRGATS VLARPTATAD FVPSSRDTVY 720 VPVGHHVVNL LPIGHHVNLG SASAGDATIS SSGAPAGAYQ YMTNPYDAMI NSSALAVAGA 780 HPHMVNPPYV GASSSRLPTA SAECYRDWLE WLHDTMAEQQ QPPPPVQFKS HHLAPSTDMA 840 DPNGHHRRLP AGAPGRLNLG SATADFVPSS RDTIYVPASR DNPLLPIGQF PQDHVKSGSA 900 SAAGNDSARD FSSSRRLDVI AEAQGAAWGW DALWEDTGFA HCLRDPKTVL CWRYMYGGDD 960 YCDLGRDCFD AHGYNDLQSK IRTGVAAASR SYSVPHPDLD LDLSDVSQFA GVFSSQQQPP 1020 ASDEWNFAVG NMQQQQQRSM TPSASSRAAA ATDADGEDPP PPPPHPPSPS AEGSASPPTT 1080 PGTPTTGADE KNVGELNDVD YPLLLPDAPA PAPAPAPAPP PPPPPPRPRP RPTTMRSRKA 1140 RLCERWMQDG ECPNGNGCHD AHGLEDQIRV AVKKTTDRGH RHTTQGTIKP ISTKQYSD

Sequence ? help Back to Top

Protein Sequence Length: 1198 aa Download sequence

MAGDDADRNR PGRGRESLPG GATSSSSPPC SNFDGLNAQA ATSIPAAFGS GPTTTTTGGG  60
DSPGDSSRIA SHLVELEDTR RSADFVPSRH DAIYVPSGRP NPLRPIGHRE DYYSGSGSAT  120
AFFPISRDPV HVPISRDIAL PPIGHPSQGR LKSGSSSASA GDDMINSSAA VSHSTGAGGG  180
FSSRHAPASD EAKKQQRAMA IRRQQQQQQQ LQLAMEIWRQ QQQQLAAAMW QEQQQQEDEM  240
AIRKQQKQDR SMVFWQQLRA MTPSSASSSS SSSSAAVADN LAPSAAAAAE GSPSPTTPTT  300
GADQKNVGGD NDADYRRLPE HMSTTNDEAT TSSTSSSPPS ELLDALDTVA KAVGDAVRFA  360
FKMDPKTTFL AHGLADFVAS AAARDALSPI FAKLAAAAAA QYNGADHRGA GFAATQQIIP  420
ISARLFVFGV SKKRTTELDL RRHFKRYGYV ADIWLRRRGG YAFLYIEIAQ PKLPVERPMA  480
KYLCQRVCPV DNSLVRIGDR VLSTLALLGN YYKASDYITN LRRYGFMEGN MLMFDSVVDY  540
ISEDCQRCSV SSVVKKSDAN KPAVHYGNNI SSTTPSVGDD ATAKFCRYCL QFVAPGDSSN  600
CGELIHNDSS LIYQESFRRF NYGLKINDKW FPVGAFVGDM SSAEAEELEN FYRPLSICRL  660
KDDQIGLAGR MMFGSGAAAG TVATTRSLAL AAPVPRGATS VLARPTATAD FVPSSRDTVY  720
VPVGHHVVNL LPIGHHVNLG SASAGDATIS SSGAPAGAYQ YMTNPYDAMI NSSALAVAGA  780
HPHMVNPPYV GASSSRLPTA SAECYRDWLE WLHDTMAEQQ QPPPPVQFKS HHLAPSTDMA  840
DPNGHHRRLP AGAPGRLNLG SATADFVPSS RDTIYVPASR DNPLLPIGQF PQDHVKSGSA  900
SAAGNDSARD FSSSRRLDVI AEAQGAAWGW DALWEDTGFA HCLRDPKTVL CWRYMYGGDD  960
YCDLGRDCFD AHGYNDLQSK IRTGVAAASR SYSVPHPDLD LDLSDVSQFA GVFSSQQQPP  1020
ASDEWNFAVG NMQQQQQRSM TPSASSRAAA ATDADGEDPP PPPPHPPSPS AEGSASPPTT  1080
PGTPTTGADE KNVGELNDVD YPLLLPDAPA PAPAPAPAPP PPPPPPRPRP RPTTMRSRKA  1140
RLCERWMQDG ECPNGNGCHD AHGLEDQIRV AVKKTTDRGH RHTTQGTIKP ISTKQYSD

Link Out ? help Back to Top
Ensembl	OGLUM07G14320.1