PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G14300.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 495aa MW: 51431.4 Da PI: 4.5314

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G14300.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.8	7.7e-08	378	404	2	27
-S---SGGGGTS.--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartG.tCkyGdrCkFaHgp 27 kt+lC ++ G C++G++Ck+aHg+ OGLUM07G14300.1 378 KTKLCAEYYSRGlGCPRGNTCKYAHGE 404 7999988888888************96 PP
2	zf-CCCH	26.3	1.2e-08	439	465	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC++f +G C + ++C+FaHg+ OGLUM07G14300.1 439 YKTKLCKTFTSGGLCLFAANCRFAHGE 465 9************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence
MADSEDGDHA ATTTTEQRYD DDGHLVPSSG GQEEEGSGGR DVVVPGGHVA EDYRSGVGVP 60 VGRDAGGATS SPPQPVHVTP SILVGSIHAP VFQGELVGMK FGVGSGSMGA GTSATRRLPA 120 TGFGALPTSS MAEDSADHAD DDHLAEEEEE EEEHYIDDGP LVPSSGGQEE EGSGGRHVFV 180 PGGHDGEEDH PDDLVADLDL DLLVDGVVGP VPGGHLNADA PAFVPTTRGR QDLYSALSSS 240 APAAGYRYRH YITSSALAEA GHVSPFLGLP YATAFDSPLD RELVGPSSAP PPCSAASRAW 300 LVRCSSPLSD SEWTRRSILA REAANTPAST VTGRGRFEFV PIPGAPYAPP PSFAPIAAGA 360 GPAARPLQQL AFGLEEHKTK LCAEYYSRGL GCPRGNTCKY AHGEDDLRLV VAVGSLADAG 420 EGSSSSDSSS AALGGEDKYK TKLCKTFTSG GLCLFAANCR FAHGEVELGK KEPCWYFFSG 480 QTCPRGDTCG FRHSY

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence

MADSEDGDHA ATTTTEQRYD DDGHLVPSSG GQEEEGSGGR DVVVPGGHVA EDYRSGVGVP  60
VGRDAGGATS SPPQPVHVTP SILVGSIHAP VFQGELVGMK FGVGSGSMGA GTSATRRLPA  120
TGFGALPTSS MAEDSADHAD DDHLAEEEEE EEEHYIDDGP LVPSSGGQEE EGSGGRHVFV  180
PGGHDGEEDH PDDLVADLDL DLLVDGVVGP VPGGHLNADA PAFVPTTRGR QDLYSALSSS  240
APAAGYRYRH YITSSALAEA GHVSPFLGLP YATAFDSPLD RELVGPSSAP PPCSAASRAW  300
LVRCSSPLSD SEWTRRSILA REAANTPAST VTGRGRFEFV PIPGAPYAPP PSFAPIAAGA  360
GPAARPLQQL AFGLEEHKTK LCAEYYSRGL GCPRGNTCKY AHGEDDLRLV VAVGSLADAG  420
EGSSSSDSSS AALGGEDKYK TKLCKTFTSG GLCLFAANCR FAHGEVELGK KEPCWYFFSG  480
QTCPRGDTCG FRHSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	2e-08	C3H family protein

Link Out ? help Back to Top
Ensembl	OGLUM07G14300.1