PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G14260.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 968aa MW: 106925 Da PI: 8.5053

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G14260.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.6	5.7e-08	290	382	1	47
TSSS-HHHHHHHHHHHHHTTTT..............................................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..............................................tWktIartmgkgRtlkqcksrwqky 47 +++W+ E e+l++++kq + +W++Ia++ gR++ +c srw+++ OGLUM07G14260.2 290 KQPWSDVEKEKLAKGIKQQYQEalilnsinngsstgdfsavdmayaltntagnfevtpeslrsvlpliNWDKIAAMYLPGRSGAECESRWLNF 382 79**************99999***********************************************99888**********97 PP
2	Myb_DNA-binding	29.4	1.8e-09	390	434	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++WT+ E+++l+ v+q G+++W Ia t+g++Rt+ qc r+q OGLUM07G14260.2 390 NAWTAREEKRLILTVQQQGMNNWINIAVTLGTHRTPFQCLVRYQR 434 68**************************************99995 PP
3	Myb_DNA-binding	43.4	7.9e-14	444	487	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W +eEd++l av+ +G++ W ++++ m gRt++qc +rw+k l OGLUM07G14260.2 444 DWAEEEDLQLQAAVNTFGTN-WQLVSASMD-GRTGNQCSNRWRKTL 487 6***************99.*****.**********975 PP
4	Myb_DNA-binding	51	3.3e-16	495	540	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 grW+ +Ed++l avk++G+g+W++Ia+ ++ gRt qc +rw+++l OGLUM07G14260.2 495 GRWSLDEDKRLMVAVKLFGSGSWNKIAQFIP-GRTQSQCNERWRNVL 540 8****************************.**********986 PP
5	Myb_DNA-binding	31.4	4.3e-10	547	591	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHH.HHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIa.rtmgkgRtlkqcksrwqky 47 g W +eEd +l+ v ++G+ W++Ia ++++ +Rt+++c rw+k+ OGLUM07G14260.2 547 GEWRPEEDSILLASVDEFGPC-WSKIAgAKIP-HRTDNMCLRRWRKL 591 68***************88.945777.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 968 aa Download sequence
MDFYSDDSDP DIDEDLQRDL DALRQSCILS GNDPDAAVAQ VSACLAAPPA AAAGAEVNGL 60 SDDDDEEEDE DLALVRSIRE NLLLNKASPS SPLPRPICAW PPSDSEDDED DLETLRAIQR 120 RFSHYHSGTS SGSEMNTKTE ASKEGSGNIF GNELDEEFDA EKHNKEATTR TGFPKAALLL 180 VDALKKNRAC QKFIRRKMIT IEAKIEENKD LRDRVKCLLD YQLSCRKAFG KILCQKEDPR 240 VRLISSRKPC AQSTKNKDKK TPALFLGPAD NPHVSKYKMV LKQLPMSLQK QPWSDVEKEK 300 LAKGIKQQYQ EALILNSINN GSSTGDFSAV DMAYALTNTA GNFEVTPESL RSVLPLINWD 360 KIAAMYLPGR SGAECESRWL NFDDPLINHN AWTAREEKRL ILTVQQQGMN NWINIAVTLG 420 THRTPFQCLV RYQRSLNHCI LNKDWAEEED LQLQAAVNTF GTNWQLVSAS MDGRTGNQCS 480 NRWRKTLNPE RSRVGRWSLD EDKRLMVAVK LFGSGSWNKI AQFIPGRTQS QCNERWRNVL 540 DPDIDLGEWR PEEDSILLAS VDEFGPCWSK IAGAKIPHRT DNMCLRRWRK LCQDKLPSVK 600 AAQQIKKSIL QCNFVDRETE RPAIGPSDLM PLVRSKVDGN DENTVSAKVR KPRKRSRIPC 660 EDNVLPGDTS NSSPSMNLPL SESIDAEAAV NTTTANSKKK PSRSRSKKQT DENLAVCDVN 720 NSSNCSSGAR KRKRSITDKN QVVQKKMKGS ISGDNEAVVE TVGTISADNE VATKRKTGST 780 SVGEEGTTKK TTRGSLSGKG EVNKRMRGSI SGVQKGATKQ RMRGSVSTDN HGAVMKSKRA 840 PSRKSAEENS KADSMANSAF GSDLPTVASE DRDADNGNVK NGRLKSMPRP KQINMTEGSA 900 DKFSTSTRLA DCMSFGRING SSRVARHLCV SVKPLSNMIQ SNGPSDVSAK DPTSAETDPT 960 SVENSNTA

Sequence ? help Back to Top

Protein Sequence Length: 968 aa Download sequence

MDFYSDDSDP DIDEDLQRDL DALRQSCILS GNDPDAAVAQ VSACLAAPPA AAAGAEVNGL  60
SDDDDEEEDE DLALVRSIRE NLLLNKASPS SPLPRPICAW PPSDSEDDED DLETLRAIQR  120
RFSHYHSGTS SGSEMNTKTE ASKEGSGNIF GNELDEEFDA EKHNKEATTR TGFPKAALLL  180
VDALKKNRAC QKFIRRKMIT IEAKIEENKD LRDRVKCLLD YQLSCRKAFG KILCQKEDPR  240
VRLISSRKPC AQSTKNKDKK TPALFLGPAD NPHVSKYKMV LKQLPMSLQK QPWSDVEKEK  300
LAKGIKQQYQ EALILNSINN GSSTGDFSAV DMAYALTNTA GNFEVTPESL RSVLPLINWD  360
KIAAMYLPGR SGAECESRWL NFDDPLINHN AWTAREEKRL ILTVQQQGMN NWINIAVTLG  420
THRTPFQCLV RYQRSLNHCI LNKDWAEEED LQLQAAVNTF GTNWQLVSAS MDGRTGNQCS  480
NRWRKTLNPE RSRVGRWSLD EDKRLMVAVK LFGSGSWNKI AQFIPGRTQS QCNERWRNVL  540
DPDIDLGEWR PEEDSILLAS VDEFGPCWSK IAGAKIPHRT DNMCLRRWRK LCQDKLPSVK  600
AAQQIKKSIL QCNFVDRETE RPAIGPSDLM PLVRSKVDGN DENTVSAKVR KPRKRSRIPC  660
EDNVLPGDTS NSSPSMNLPL SESIDAEAAV NTTTANSKKK PSRSRSKKQT DENLAVCDVN  720
NSSNCSSGAR KRKRSITDKN QVVQKKMKGS ISGDNEAVVE TVGTISADNE VATKRKTGST  780
SVGEEGTTKK TTRGSLSGKG EVNKRMRGSI SGVQKGATKQ RMRGSVSTDN HGAVMKSKRA  840
PSRKSAEENS KADSMANSAF GSDLPTVASE DRDADNGNVK NGRLKSMPRP KQINMTEGSA  900
DKFSTSTRLA DCMSFGRING SSRVARHLCV SVKPLSNMIQ SNGPSDVSAK DPTSAETDPT  960
SVENSNTA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	1e-147	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM07G14260.2