PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM07G12990.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LSD | ||||||||
Protein Properties | Length: 213aa MW: 22817.3 Da PI: 7.7527 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 42.5 | 1.1e-13 | 119 | 143 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP+GA+s++Ca+C tV OGLUM07G12990.2 119 CSGCRNLLMYPAGATSICCAVCGTV 143 ************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence |
MAVLYVTFLR EVDVGRGLVA LCAHWLKLIV ALLSTSLIYQ EVLSSLAFTG FFRTEIFLAF 60 SSASLESFCR ERKGDFSCLT VAGICEASTS DAIGSGSWHS NAGSPCPISN SWAQSQLVCS 120 GCRNLLMYPA GATSICCAVC GTVTAVPAPE QKSSCNVHEN KERLKGNTNG FRAPQRCARR 180 VDGACTQVAR EVHTEVALVI FTLLCVTLPA SNH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 5e-16 | LSD family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM07G12990.2 |