PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G10490.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YB

Protein Properties

Length: 296aa MW: 33684.8 Da PI: 5.3059

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G10490.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	71.7	1.3e-22	11	95	3	87
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 ++d lP + + +i+k++lP + ++++da++++ ec +efi +++se+++ c re++kti+++ +l al +lGf +y+e++++ OGLUM07G10490.1 11 KEDVSLPKSTMFKIIKEMLPPDVRVARDAQDLLVECCVEFINLLSSESNEVCSREDKKTIAPEHVLRALQDLGFREYIEEVQAAY 95 67999**************************************************************************998654 PP

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence
MDPMDIVGKS KEDVSLPKST MFKIIKEMLP PDVRVARDAQ DLLVECCVEF INLLSSESNE 60 VCSREDKKTI APEHVLRALQ DLGFREYIEE VQAAYEHHKH DTLDSPKASK FTGVEMTEEQ 120 AVAEQQRMFA EARARMNNGA AKPKEPEPEA QQQTQQPPQP QLHPQPQQPL QPQLQLHPQP 180 QQQPSQLHPQ QLLHPQSQQT PQPQPQVHPQ PQQPPQLQPQ PQLLQQPQLP QQLQPQSQLP 240 PQPQQPPQLQ LQSQLHPQPQ QPPQLQPQPQ LHQQPQPQAE LQSQSQPQTE HGLDSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.4	2e-80	NF-YB family protein

Link Out ? help Back to Top
Ensembl	OGLUM07G10490.1