PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G02670.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 444aa    MW: 47151.2 Da    PI: 9.4981
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G02670.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.66.3e-40581972132
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec.........eaesssss 81 
                       g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LG+d++sk+ieWL+++a +ai++l+++     ++ +as++                 
  OGLUM07G02670.1  58 SGGKDRHSKVYTAKGIRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKAAAAAIDKLPSLdtasfPTHPASSAavaaaaappL------- 144
                      689*************************************************************77666222222222221112222....... PP

              TCP  82 asnsssg.......kaaksaakskksqksaasalnlak.esrakarararertrekmri 132
                            +       ++ +++ +s+ s++s+ s+l+l++ esr kar+rarer++   + 
  OGLUM07G02670.1 145 ------PhaereqqQQLTKSGCSSTSETSKGSVLSLSRsESRVKARERARERSSAAAAA 197
                      ......0222223356777779999**************************99877665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    
MELAGSNNKR GRVRGPNDDD DDAGEPDAKR HHHQLLLPWP QQQQQHPASR IYRVSRASGG  60
KDRHSKVYTA KGIRDRRVRL SVSTAIQFYD LQDRLGYDQP SKAIEWLIKA AAAAIDKLPS  120
LDTASFPTHP ASSAAVAAAA APPLPHAERE QQQQLTKSGC SSTSETSKGS VLSLSRSESR  180
VKARERARER SSAAAAAASK DAGDDAATPT APTAAPASSQ AASFTELLTG MAAANASPAD  240
HKQQQAWQPM TVAAATADYI GFAAAAAPHT QPRKSAAGHH SAMPHTFASP APHLANITPI  300
AMAPAQHFTL TPAAAEHHAE MTHYSFDHFM PVHAAAAAAA AASTPAGGDY NLNFSMSSGL  360
VGVHSRGTLQ SNSQSHLSSH HHHHHQQQQQ QQQLQRLSAP LDAPNIPFLF SPAAAPTAAD  420
TQFAAALQLW DGFRHADIKE KGKH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.13e-36TCP family protein