PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G28660.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 200aa    MW: 22159 Da    PI: 7.0583
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G28660.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.86.7e-29959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krien +nrqvt+skRr+gi+KKA EL vLCda+va+i+fsstgk +e++s
  OGLUM06G28660.1  9 KRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCS 59
                     79***********************************************96 PP

2K-box33.51.7e-12831403698
            K-box  36 RhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                       +++GedL+ L++ eL+ Leq+++ +lk      ++++++q+e+ +kk k   e+ k+L+++l
  OGLUM06G28660.1  83 QQRMGEDLDGLEFDELRGLEQNVDAALK-----EYHVITTQTETYKKKVKHSYEAYKTLQQEL 140
                      699************************7.....59************************9986 PP

Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    
MGRGKIEIKR IENATNRQVT YSKRRTGIMK KARELTVLCD AQVAIIMFSS TGKYHEFCSP  60
STDIKGIFDR YQQAIGTSLW IEQQRMGEDL DGLEFDELRG LEQNVDAALK EYHVITTQTE  120
TYKKKVKHSY EAYKTLQQEL GLREEPAFGF VDNTGGGWDG GAGAGAGAGA AADMFAFRVV  180
PSQPNLHGMA YGGNHDLRLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.12e-45MIKC_MADS family protein