PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G28640.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SRS
Protein Properties Length: 358aa    MW: 34897.3 Da    PI: 8.4207
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G28640.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702216.56e-671282854154
           DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrelkskkqs.alsstk 90 
                       ++sCqdCGn+akkdC+h RCRtCC+srgf+CathvkstWvpaakrrerqqqlaa+ + aaa++      a+aaskr+rel  +     +++t 
  OGLUM06G28640.1 128 AGTSCQDCGNNAKKDCSHLRCRTCCRSRGFSCATHVKSTWVPAAKRRERQQQLAALFRGAAANNsaaaaaAAAASKRPRELVRTLGRlPSANTA 221
                      4579***************************************************999998888788877788899999984433320333444 PP

           DUF702  91 lssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                      ++ +++++     ++P+e+s+eavfrcvr+++vd++++elaYqtavsigGh+fkGiL+d+G+++
  OGLUM06G28640.1 222 MVATTTSSGEGDGRFPPELSVEAVFRCVRIGAVDEADAELAYQTAVSIGGHTFKGILRDHGPAD 285
                      44455555666778***********************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    
MAGFSLRGGG GGGGGGGVGG GGGGGRGGER GGGGDHAIGA DSLFLYARGA AAAAADTAGS  60
GGGGGGIGFQ LWHPQQQAAA AAAAVPHTSQ FFSSGVATGV VLGFSSHDGG GGGGHMGGPG  120
GGAGGGRAGT SCQDCGNNAK KDCSHLRCRT CCRSRGFSCA THVKSTWVPA AKRRERQQQL  180
AALFRGAAAN NSAAAAAAAA ASKRPRELVR TLGRLPSANT AMVATTTSSG EGDGRFPPEL  240
SVEAVFRCVR IGAVDEADAE LAYQTAVSIG GHTFKGILRD HGPADEAAGQ LPPSSAEYHQ  300
LTGQGREESS PAGSSEGVGG GHGAATAATS AAVLMDPYPT PIGAFAAGTQ FFPHNPRT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1726RGGGGGGGGGGVGGGGGGGR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.13e-54SRS family protein