PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G28090.3
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 426aa    MW: 46772.9 Da    PI: 9.9297
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G28090.3genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.53.1e-10526325
                     S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaH 25
                     +e+Cr+f+r G CkyG++C++ H
  OGLUM06G28090.3  5 QEICRNFQR-GSCKYGAQCRYLH 26
                     79*******.************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    
MSRRQEICRN FQRGSCKYGA QCRYLHASPH QQQQQQAKPN PFGFGTGSRQ QQQPSFGSQF  60
QQQQQQQQKP NPFGFGVQGA NAQSRNAPGP AKPFQNKWVR DPSAPTKQAE AVQPPQAQAA  120
HTSCEDPQSC RQQISEDFKN EAPIWKLTCY AHLRNGPCDI KGDISFEELR AKAYEEGKQG  180
HSLQSIVEGE RNLQNAKLME FTNLLNSARP SQTPSFPTMS SFPEVKNNSS FGASQTNGPP  240
VFSSFSQIGA ATNIGPGPGT TAPGMPASSP FGHPSSAPLA APTFGSSQMK FGVSSVFGNQ  300
GSGQPFGSFQ APRFPSSKSP ASSVQHRDID RQSQELLNGM VTPPSVMSEE SVGNNKNENQ  360
DDSIWLKEKW AIGELQGQQR NSTTNRRRIH KSEGRHGTLM WATRANNQLT AVSTCRVSMF  420
LLFFYL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.13e-48C3H family protein