PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G26340.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 348aa    MW: 39696.5 Da    PI: 8.7013
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G26340.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.81.7e-071437126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     ykt+lC  +++ G+C++ ++C+FaHg
  OGLUM06G26340.1 14 YKTKLCALWRQ-GECNR-ASCSFAHG 37
                     9**********.*****.*******9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    
MREMMGPPRR GPAYKTKLCA LWRQGECNRA SCSFAHGDAE LRGPPPRSPF PPRGGPGRRD  60
HRPDDFRGRH LRPHRRNSPE RDARDHLFRD HRPRSRDRGS SHSRSPIRKR HRKKLEGGKT  120
NSSESLNSSD NEDRKKDDRF NKADDKHDNE AQLQRIQLDM EALHEEKSSL EVILNGKINE  180
ASKLSSRIAD LESQLNDEKE ACERSQARFE RFADLLASDT LKPCSKDQGS SAAKEDPYNA  240
YEMSPSDQRQ NHETTRKRSV ALSTSEEGRN GKKRRESYDN RDPMSEKYRP EDALEPFQSS  300
KGTEAKELLS VKKNLGDGDN NEKGNVVSSA NVFTDRYEGG DDDDVLVD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256275RKRSVALSTSEEGRNGKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.11e-06C3H family protein