PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G26120.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 431aa MW: 46007.2 Da PI: 6.9124

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G26120.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.3	6.3e-17	28	75	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed+llvd v+++G g+W+++ r+ g+ R++k+c++rw ++l OGLUM06G26120.1 28 KGPWTQAEDKLLVDHVRRHGEGNWNAVRRETGLQRCGKSCRLRWANHL 75 79******************************************9986 PP
2	Myb_DNA-binding	44.8	2.9e-14	81	124	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+++++E+ l+++++ +lG++ W++I++++ gRt++++k++w++ OGLUM06G26120.1 81 KGPFSPDEERLILRLHGLLGNK-WARISSYLH-GRTDNEIKNYWNT 124 79******************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence
MARSGGGNGG GEGGGGGGNG GGGGGLKKGP WTQAEDKLLV DHVRRHGEGN WNAVRRETGL 60 QRCGKSCRLR WANHLRPDLR KGPFSPDEER LILRLHGLLG NKWARISSYL HGRTDNEIKN 120 YWNTRLKRRV RAGLTPYPPE IEREIAHLRA QNLNLSSADG GGTPLLVDPS NPFALQAAPV 180 VAPSPSASQA SSPPLINQNY PLLNQMQGLQ LLHLANHQQA PPHQQQQQPA FHHHHDGGGG 240 FVSSGLPPLP NRPRELPSNQ FETATSGGGG GGDALLESLL LGDDHLLPRP NPAMLRVGSM 300 PELMYREPSS SHVLHGGGGG DNNVTSQYPP GEEDPHYGGR WDFIFEDVKP KRKAASAVEE 360 EISGMFGIAP GSIPGEWFSP GGVGAAAGGS SAPSPGPSSV VTTDDDFTLE MQQIMSSLPL 420 LQPEDQHNWN A

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence

MARSGGGNGG GEGGGGGGNG GGGGGLKKGP WTQAEDKLLV DHVRRHGEGN WNAVRRETGL  60
QRCGKSCRLR WANHLRPDLR KGPFSPDEER LILRLHGLLG NKWARISSYL HGRTDNEIKN  120
YWNTRLKRRV RAGLTPYPPE IEREIAHLRA QNLNLSSADG GGTPLLVDPS NPFALQAAPV  180
VAPSPSASQA SSPPLINQNY PLLNQMQGLQ LLHLANHQQA PPHQQQQQPA FHHHHDGGGG  240
FVSSGLPPLP NRPRELPSNQ FETATSGGGG GGDALLESLL LGDDHLLPRP NPAMLRVGSM  300
PELMYREPSS SHVLHGGGGG DNNVTSQYPP GEEDPHYGGR WDFIFEDVKP KRKAASAVEE  360
EISGMFGIAP GSIPGEWFSP GGVGAAAGGS SAPSPGPSSV VTTDDDFTLE MQQIMSSLPL  420
LQPEDQHNWN A

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	131	RLKRRVR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.1	3e-57	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G26120.1