PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OGLUM06G26000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 917aa MW: 101782 Da PI: 6.2107 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.7 | 2.6e-24 | 134 | 235 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++ OGLUM06G26000.1 134 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 223 99*****************************86555544..8************************************************..77 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++ +l+++++r+ OGLUM06G26000.1 224 DNNQLLLGIRRA 235 77778***9997 PP | |||||||
2 | Auxin_resp | 118 | 7.6e-39 | 260 | 343 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdld rWpnS+Wrs+k OGLUM06G26000.1 260 AAHAASTNSRFTIFYNPRASPSEFVIPLSKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDAARWPNSHWRSVK 343 79*********************************9789******************************************985 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 917 aa Download sequence |
MRLSSSSGSV LPAQAASPEA VEEQKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHSEQV 60 AASTNKEMES QIPNYPNLPP QLICQLHNVT MHADAETDEV YAQMTLQPLS PQELKDPYLP 120 AELGSANKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTQQPP AQELIAKDLH 180 GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDNNQLLL GIRRANRPQT 240 VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP SEFVIPLSKY VKAVYHTRIS 300 VGMRFRMLFE TEESSVRRYM GTITGISDLD AARWPNSHWR SVKVGWDEST AGERQPRVSL 360 WEIEPLTTFP MYPSPFPLRL KRPWPTGLPS LHGGKDDDLT SSLMWLRDSA NPGFQSLNFG 420 GLGMNPWMQP RFDASLLGLQ PDMYQTIAAT AFQDPTKQVS PTILQFQQPQ NIGGRANTLL 480 PSQILQQVQP QFQQQQYLQN INETTIQGHA QSEFLQQQLQ RCQSFTEQKP QLQTQQQQQE 540 SQQQQQQQSQ CMQVPQHQQM QQQKNMTNYQ SVPNALSPFS QLSSPSQSSP MTLQTVLPFS 600 QPQSYPDTSM SSLSPSNTST MHNALRPFSS EAPSHLSMPR PTAVPVPDPW SSKRVAVESL 660 LPSRPQVTSQ MEQLDSTAPS IPQSSALAPL PGRGCLVDQD GNSDPQNHLL FGVNIDSQSL 720 LMQGGIPSLQ GENDSTAIPY STSNFLSPSQ NDFPLDQTLS SADCLDESGY VPCSQNSDQV 780 INRPPATFVK VYKSGTYGRS LDITRFSSYH ELRRELGRLF GLEGQLENPL RSGWQLVFVD 840 REDDVLLVGD DPWQEFVNSV SCIKILSPQE VQQMGKPFEL LSSAPGKRLG SSCDDYVSRQ 900 ESRSLSTGIA SVGSVEF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G30330.2 | 0.0 | ARF family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OGLUM06G26000.1 |