PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OGLUM06G25990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 691aa MW: 75068.3 Da PI: 7.1516 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19 | 2.4e-06 | 143 | 163 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ + G+C+ G++C++ H+ OGLUM06G25990.1 143 ECNMYKM-GFCPNGPNCRYKHV 163 6666666.*************7 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 691 aa Download sequence |
MSPKSQLPTG AKNPKNSLSP TMDDGDLSFD FEGGLDQAPA GGGGGPAPHS SDPGGVGGGG 60 VGGGGGGGGP GDGGGHGRGR GRGSYRQTVC RHWLRGLCMK GEACGFLHQF DKARMPVCRF 120 FRDFGECREP DCAYKHSYDD VKECNMYKMG FCPNGPNCRY KHVKLPGPPP PVEEVLQKIL 180 QIRSFNKFNQ HRHNNYNQQG ERPQHPQGSG LPNQNSIDNT TTTTAQPAVG QQAQTTNQQP 240 PQQQQQQQQQ QQQQQKPNTN DQVQSVPNGS SNQATRIATP LPQGPSRYFI VKSCNRENLE 300 ISVQQGIWAT QRSNEAKLNE AFESIENVIL IFSINRTRNF QGCAKMTSRI GGYIGGGNWK 360 SAHGTAHYGR NFSIQWLKLC ELSFQKTHHL RNPYNDNLPV KISRDCQELE PFIGEQLASL 420 LYLEPDSELT AILIAAEAKK EEEKAKGVSA DEAADNQDIV LFDDNEEEEE EESEEEEEGN 480 GQESQGRGRG RGMMWPTQMP MLRGVGPMMG GRGFPPNMIG DGFGFGGGFG MPDPFGVPRG 540 FPPFGPRFPG DFARGGPMPG MVFPGRPPQP GGMFPMGLEM MMGPGRGPLM GGLGMGGPGR 600 PNRPVGMAPF MPPPPPPNNR GTKREQRRPG GERGDRYETT SDQGSRGHDA TGNSGAEGAR 660 SQSGDRYGRS ALRDDDSESD EEAAPRRSRK R |
Link Out ? help Back to Top | |
---|---|
Ensembl | OGLUM06G25990.1 |