PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G25990.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 691aa    MW: 75068.3 Da    PI: 7.1516
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G25990.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.4e-06143163526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ +   G+C+ G++C++ H+
  OGLUM06G25990.1 143 ECNMYKM-GFCPNGPNCRYKHV 163
                      6666666.*************7 PP

Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    
MSPKSQLPTG AKNPKNSLSP TMDDGDLSFD FEGGLDQAPA GGGGGPAPHS SDPGGVGGGG  60
VGGGGGGGGP GDGGGHGRGR GRGSYRQTVC RHWLRGLCMK GEACGFLHQF DKARMPVCRF  120
FRDFGECREP DCAYKHSYDD VKECNMYKMG FCPNGPNCRY KHVKLPGPPP PVEEVLQKIL  180
QIRSFNKFNQ HRHNNYNQQG ERPQHPQGSG LPNQNSIDNT TTTTAQPAVG QQAQTTNQQP  240
PQQQQQQQQQ QQQQQKPNTN DQVQSVPNGS SNQATRIATP LPQGPSRYFI VKSCNRENLE  300
ISVQQGIWAT QRSNEAKLNE AFESIENVIL IFSINRTRNF QGCAKMTSRI GGYIGGGNWK  360
SAHGTAHYGR NFSIQWLKLC ELSFQKTHHL RNPYNDNLPV KISRDCQELE PFIGEQLASL  420
LYLEPDSELT AILIAAEAKK EEEKAKGVSA DEAADNQDIV LFDDNEEEEE EESEEEEEGN  480
GQESQGRGRG RGMMWPTQMP MLRGVGPMMG GRGFPPNMIG DGFGFGGGFG MPDPFGVPRG  540
FPPFGPRFPG DFARGGPMPG MVFPGRPPQP GGMFPMGLEM MMGPGRGPLM GGLGMGGPGR  600
PNRPVGMAPF MPPPPPPNNR GTKREQRRPG GERGDRYETT SDQGSRGHDA TGNSGAEGAR  660
SQSGDRYGRS ALRDDDSESD EEAAPRRSRK R