PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM06G25360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 205aa MW: 23545.4 Da PI: 4.785 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 27.1 | 5.2e-09 | 9 | 29 | 1 | 21 |
S---SHHHHHHHHHHHHHHHH CS SRF-TF 1 krienksnrqvtfskRrngil 21 krie+ ++rqvtfskRr+g++ OGLUM06G25360.1 9 KRIEDATRRQVTFSKRRAGLM 29 79******************9 PP | |||||||
2 | K-box | 60.3 | 8e-21 | 46 | 137 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLs.lkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++++ e++ e+++L++ei++L+ ++R+ GedL+s s + eL qL+ qLe+sl+++ ++K+el+ +q+e+++ + + ++e+n+ L +++ OGLUM06G25360.1 46 ETNRDDEQMVMEITRLRNEIDQLEASLRRQTGEDLSSVStVDELSQLQLQLESSLSNVHARKDELMSQQLEDMRCMHQTVHEQNNFLCRMMS 137 4556678999***************************984689*******************************************988765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence |
MGRGKIEMKR IEDATRRQVT FSKRRAGLME LFHRYEITTR NTRLQETNRD DEQMVMEITR 60 LRNEIDQLEA SLRRQTGEDL SSVSTVDELS QLQLQLESSL SNVHARKDEL MSQQLEDMRC 120 MHQTVHEQNN FLCRMMSENW QSPGSGEASA MEALTMLPPA AAATTAAEAF NCFFPEEEKG 180 VAASSTLLQL WPQPHDGDQP DLRLW |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 6e-16 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM06G25360.1 |