PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G23980.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TALE

Protein Properties

Length: 283aa MW: 30632.3 Da PI: 6.8645

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G23980.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	23.4	1e-07	226	259	21	54
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + OGLUM06G23980.1 226 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 259 569*****************************87 PP
2	ELK	29.5	1.6e-10	180	201	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++L+++++E++ OGLUM06G23980.1 180 ELKHELKQGYREKLVDIREEIL 201 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence
MAFHYQDHAL AMDAAAAAAE TGGHHHPGFV GAGGVVGGGG GGGWEREKAA IAAHPLYERL 60 LEAHVACLRV ATPVDQLPRI DAQIAARPPP LAAASAAAAA DPLCIAPLFV QGTTTATFVT 120 LTAGASPGEG SGATMSDDED NQVDSESNMF DGNDGSDGMG FGPLMLTEGE RSLVERVRQE 180 LKHELKQGYR EKLVDIREEI LRKRRAGKLP GDTASTLKAW WQAHSKWPYP TEEDKARLVQ 240 ETGLQLKQIN NWFINQRKRN WHSNPASSSS DKSKRKRYRV VDF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	257	277	RKRNWHSNPASSSSDKSKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25220.2	2e-84	TALE family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G23980.1