PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G23380.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

AP2

Protein Properties

Length: 436aa MW: 47335.7 Da PI: 8.0761

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G23380.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.6	6.3e-18	89	138	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta+ Aa+a+++a+ k++g OGLUM06G23380.1 89 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 138 78*****************......55**********************997 PP
2	AP2	40.5	6.7e-13	181	229	1	53
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkl 53 s+++GV+ +k g+W+A+I +k+++lg ++t+ eAaka+++a+ k OGLUM06G23380.1 181 SRFRGVTLHK-CGKWEARIGQlM----GKKYVYLGLYDTEMEAAKAYDKAAIKC 229 789*****.7**77733....25******77*******9885 PP

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence
MAATFYGVGS IALAMHEDDE EEGSGRVFGF AAGDLVRPAV VTQQLFPMTA AAAAVVPEST 60 EQRHVAAAAE QWARPPSRKT RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD 120 TAQAAARAYD QAAIKFRGVE ADINFTLDDY KEDIKKMNNF SKEEFVQVLR RQGAGFVRGS 180 SRFRGVTLHK CGKWEARIGQ LMGKKYVYLG LYDTEMEAAK AYDKAAIKCC GKEAVTNFDT 240 QAYEDELNLQ SWDSELDLEL SLGCSGGERA AGEVLHSAPS NQRTSLTFML PEEEEMTACH 300 RQRSIWARPS LAPAMPDGGA VIRPDQHQHH PSSRNMLLMS QVISSSGGGG SGRQGAAELH 360 MRPRHGWSSG GNNWAPPYAA RPRLPGAEDD DDSAAAASSG FPMGQVATAS SSSRPSSSSC 420 SSRRSSTAAA TATTGR

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence

MAATFYGVGS IALAMHEDDE EEGSGRVFGF AAGDLVRPAV VTQQLFPMTA AAAAVVPEST  60
EQRHVAAAAE QWARPPSRKT RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD  120
TAQAAARAYD QAAIKFRGVE ADINFTLDDY KEDIKKMNNF SKEEFVQVLR RQGAGFVRGS  180
SRFRGVTLHK CGKWEARIGQ LMGKKYVYLG LYDTEMEAAK AYDKAAIKCC GKEAVTNFDT  240
QAYEDELNLQ SWDSELDLEL SLGCSGGERA AGEVLHSAPS NQRTSLTFML PEEEEMTACH  300
RQRSIWARPS LAPAMPDGGA VIRPDQHQHH PSSRNMLLMS QVISSSGGGG SGRQGAAELH  360
MRPRHGWSSG GNNWAPPYAA RPRLPGAEDD DDSAAAASSG FPMGQVATAS SSSRPSSSSC  420
SSRRSSTAAA TATTGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	4e-87	AP2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G23380.1