PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM06G23280.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 1824aa MW: 199303 Da PI: 7.4589 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.2 | 9.1e-06 | 1695 | 1716 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+ f +tG+C+ G+rCk +H++ OGLUM06G23280.3 1695 CPVFEATGECPQGSRCKLHHPK 1716 *****************99985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1824 aa Download sequence |
MVHEGFSIHS DSKVSRKIQM PTQMALPGSP HGTSAGYARR APQKVAPSRV SVWHRIEENP 60 AMYEPSSPLP HMPKEVHVSP CKSNNVAPAS KELASVISVD CRGKSADGND GDSNTGTKKN 120 PVKKNEKVLA SVLVKPPMEP KEKEVAAKKM LKKPDKVQKN AVHSNIRSLV STPCPGAGAK 180 KVKKIVIKKI VRKINGKGNQ NSTPVVSEKR DGIDANACEK EEGEITTSSF EKDVISAHDP 240 IAVSDTAGFG NAVNDQKQKN TNFTNPSGRN AASANGSMEI PDPPNGSGSA HPGKEEVLSP 300 KNPVDNSNAS LVVEPIEVLE KSGTEHPRKE HDMSSIGSGV NDAFADANNH TQKEVGEMNV 360 TVAINSVRVS DAREVPRCDD SSMEESKVPK DVDANNAVCM DGVASNCDTT EVCGNEDARR 420 ECGKKLIGIN DEKAFLLNNS ARSSSTSDTC MTAVEGAQKK EGIILTGSSE KSIGFLGDSV 480 GTHRTTEFGA SKDAPNEGDD MPSHPSEKDF MSLNSCGGLN YTEVSEKEDI QEKEDRVPME 540 SIVACTSSGN EDIQVNEGRK PMELSEANAF SGSGDSQGKE CRIPMGSSET NTSSVNHVNA 600 SNEKDFSLSE DTQKKESHRP IESCENTTFE IMHHEEAPST EEVITGVSLG RKVAEGPTRS 660 NERCSGARGN SATTLKFGLA CATKDNQMED LLNNRTALNE TDDPLDAEDS PVFVPPSSRN 720 VESTYASPLY DPMEDSTSDG ILNIGLGRNT TSKAAELLDL HRDHISSEND SLIHSRGTSS 780 VSGNREQSVP TALTLGSNIY FSSAETDDRP EERHELVVEG QQGLTVETTS KLDSPGKIEV 840 LNGAGFISTG IQNWLSLPPS INSMEMSGQF LNNGFTVSKG RLGLDQSMDD ATSMSQDHDI 900 AQDMDQRGSE DAFFSQDHSI RLCGSDLPHS HLLAPKESSM NGEDQSGIVL TGLHPSSSVN 960 VLGHYGYQTD DIPVDNLNKL PSALESSDAM DADQVSSQVC VNPDHTNDSN TENAGVESNA 1020 KQDLLSSWIE AIVSEAKKEH PPCKSTPLTV GLPDKLLEPK DSDRKTLLET VVPSAVKSPQ 1080 INFASSTLQK VAPKQVTLPS SSREPTRANQ NARHRTWHRG NIASSSSSLH ASQPLGLPPK 1140 LPPKKNDKAQ NSYIRKGNAL IRNPSNGNHP HSSTGHDTQN KLNKPVVRRS MNFVRTADTK 1200 DLANSNISVE RPKTPPLPLH TKSSCPTTLL EPLSQTLQKQ HGHEAEKEDL TGQPKSGVDN 1260 SSIKSAQKSE PSDPSKVVYV RPKSNQLVAA QRQHPIDLVN SPTDKILSLQ APIASDLYLK 1320 KRKNQIVLSS CSPSDGLSTK ETLPAENSNS EEKKDLMIAC SISGIPGVKD RPQKALQTTN 1380 NVGRFSHVWT LNGQQPQRKG FMGSSHMNAF PRILPWKRKI FCKNFRSSHM SNVSSIRIVR 1440 KLLQTRKRDM IYTVSTDGFS LRKSGVLSVG GSSLKWSRSL EKRSQKVNKE ATLALAEVER 1500 RKREKRKRQS LHDKGGNDHQ FESVTGNQLR NSRQSSSDLR KPSTCNEYVR VSKGNQLVRN 1560 PKNVIRMLAS DKVRWSLHTV RSRLAKKQQY CQFFTRFGEC KKPRGKCPYI HDRAKVTICT 1620 KFLKGLCSNT SCKLTHKVLP ERMPDCSYFL RGLCTNIACP YRHVKVNLNA PVCEDFLKGY 1680 CAYGDECHKK HSYVCPVFEA TGECPQGSRC KLHHPKSKVK SKSRRPDFLQ NSSWGRYFDA 1740 SIDHQDETRK VSLDEDEREK PQRVFSDGDL GFISLDDDAD EDVTALDASD DIPLMELDSG 1800 DLSAQTDNLD ALIKPLRIMR TARV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1500 | 1505 | RRKREK |
Link Out ? help Back to Top | |
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Ensembl | OGLUM06G23280.3 |