PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G23280.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 2039aa MW: 223721 Da PI: 7.3939

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G23280.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17	1e-05	1910	1931	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+ f +tG+C+ G+rCk +H++ OGLUM06G23280.2 1910 CPVFEATGECPQGSRCKLHHPK 1931 *****************99985 PP

Sequence ? help Back to Top
Protein Sequence Length: 2039 aa Download sequence
MDPPPPFDHP LHRRHYSDHH HFPPGGSGGS GGAASAAARS RYEYGGGGGG YHLPDHHHHH 60 HHHPPPRVQH HHHHHHQQLP APTPPPPPPP PLPQHRLEPP PPHYGFPPRG HPDAYSPPPY 120 HDPSPHHHYH RHGGDDFLPA DEIRRVGGGH HHHHHHPHLQ QLLPWEEAEE ERRRYGGATQ 180 QLRLSPSGPR KRQRCAVHDA DVESTSSSGP PPRRQRQQPH PDYALDDSFV DRNNAHPGYM 240 VHEGFSIHSD SKVSRKIQMP TQMALPGSPH GTSAGYARRA PQKVAPSRVS VWHRIEENPA 300 MYEPSSPLPH MPKEVHVSPC KSNNVAPASK ELASVISVDC RGKSADGNDG DSNTGTKKNP 360 VKKNEKVLAS VLVKPPMEPK EKEVAAKKML KKPDKVQKNA VHSNIRSLVS TPCPGAGAKK 420 VKKIVIKKIV RKINGKGNQN STPVVSEKRD GIDANACEKE EGEITTSSFE KDVISAHDPI 480 AVSDTAGFGN AVNDQKQKNT NFTNPSGRNA ASANGSMEIP DPPNGSGSAH PGKEEVLSPK 540 NPVDNSNASL VVEPIEVLEK SGTEHPRKEH DMSSIGSGVN DAFADANNHT QKEVGEMNVT 600 VAINSVRVSD AREVPRCDDS SMEESKVPKD VDANNAVCMD GVASNCDTTE VCGNEDARRE 660 CGKKLIGIND EKAFLLNNSA RSSSTSDTCM TAVEGAQKKE GIILTGSSEK SIGFLGDSVG 720 THRTTEFGAS KDAPNEGDDM PSHPSEKDFM SLNSCGGLNY TEVSEKEDIQ EKEDRVPMES 780 IVACTSSGNE DIQVNEGRKP MELSEANAFS GSGDSQGKEC RIPMGSSETN TSSVNHVNAS 840 NEKDFSLSED TQKKESHRPI ESCENTTFEI MHHEEAPSTE EVITGVSLGR KVAEGPTRSN 900 ERCSGARGNS ATTLKFGLAC ATKDNQMEDL LNNRTALNET DDPLDAEDSP VFVPPSSRNV 960 ESTYASPLYD PMEDSTSDGI LNIGLGRNTT SKAAELLDLH RDHISSENDS LIHSRGTSSV 1020 SGNREQSVPT ALTLGSNIYF SSAETDDRPE ERHELVVEGQ QGLTVETTSK LDSPGKIEVL 1080 NGAGFISTGI QNWLSLPPSI NSMEMSGQFL NNGFTVSKGR LGLDQSMDDA TSMSQDHDIA 1140 QDMDQRGSED AFFSQDHSIR LCGSDLPHSH LLAPKESSMN GEDQSGIVLT GLHPSSSVNV 1200 LGHYGYQTDD IPVDNLNKLP SALESSDAMD ADQVSSQVCV NPDHTNDSNT ENAGVESNAK 1260 QDLLSSWIEA IVSEAKKEHP PCKSTPLTVG LPDKLLEPKD SDRKTLLETV VPSAVKSPQI 1320 NFASSTLQKV APKQVTLPSS SREPTRANQN ARHRTWHRGN IASSSSSLHA SQPLGLPPKL 1380 PPKKNDKAQN SYIRKGNALI RNPSNGNHPH SSTGHDTQNK LNKPVVRRSM NFVRTADTKD 1440 LANSNISVER PKTPPLPLHT KSSCPTTLLE PLSQTLQKQH GHEAEKEDLT GQPKSGVDNS 1500 SIKSAQKSEP SDPSKVVYVR PKSNQLVAAQ RQHPIDLVNS PTDKILSLQA PIASDLYLKK 1560 RKNQIVLSSC SPSDGLSTKE TLPAENSNSE EKKDLMIACS ISGIPGVKDR PQKALQTTNN 1620 VGRFSHVWTL NGQQPQRKGF MGSSHMNAFP RILPWKRKIF CKNFRSSHMS NVSSIRIVRK 1680 LLQTRKRDMI YTVSTDGFSL RKSGVLSVGG SSLKWSRSLE KRSQKVNKEA TLALAEVERR 1740 KREKRKRQSL HDKGDHQFES VTGNQLRNSR QSSSDLRKPS TCNEYVRVSK GNQLVRNPKN 1800 VIRMLASDKV RWSLHTVRSR LAKKQQYCQF FTRFGECKKP RGKCPYIHDR AKVLPERMPD 1860 CSYFLRGLCT NIACPYRHVK VNLNAPVCED FLKGYCAYGD ECHKKHSYVC PVFEATGECP 1920 QGSRCKLHHP KSKVKSKSRR PDFLQNSSWG RYFDASIDHQ DETRKVSLDE DEREKPQRVF 1980 SDGDLGFISL DDDADEDVTA LDASDDIPLM ELDSGDLSAQ TDNLDALIKP LRIMRTARV

Sequence ? help Back to Top

Protein Sequence Length: 2039 aa Download sequence

MDPPPPFDHP LHRRHYSDHH HFPPGGSGGS GGAASAAARS RYEYGGGGGG YHLPDHHHHH  60
HHHPPPRVQH HHHHHHQQLP APTPPPPPPP PLPQHRLEPP PPHYGFPPRG HPDAYSPPPY  120
HDPSPHHHYH RHGGDDFLPA DEIRRVGGGH HHHHHHPHLQ QLLPWEEAEE ERRRYGGATQ  180
QLRLSPSGPR KRQRCAVHDA DVESTSSSGP PPRRQRQQPH PDYALDDSFV DRNNAHPGYM  240
VHEGFSIHSD SKVSRKIQMP TQMALPGSPH GTSAGYARRA PQKVAPSRVS VWHRIEENPA  300
MYEPSSPLPH MPKEVHVSPC KSNNVAPASK ELASVISVDC RGKSADGNDG DSNTGTKKNP  360
VKKNEKVLAS VLVKPPMEPK EKEVAAKKML KKPDKVQKNA VHSNIRSLVS TPCPGAGAKK  420
VKKIVIKKIV RKINGKGNQN STPVVSEKRD GIDANACEKE EGEITTSSFE KDVISAHDPI  480
AVSDTAGFGN AVNDQKQKNT NFTNPSGRNA ASANGSMEIP DPPNGSGSAH PGKEEVLSPK  540
NPVDNSNASL VVEPIEVLEK SGTEHPRKEH DMSSIGSGVN DAFADANNHT QKEVGEMNVT  600
VAINSVRVSD AREVPRCDDS SMEESKVPKD VDANNAVCMD GVASNCDTTE VCGNEDARRE  660
CGKKLIGIND EKAFLLNNSA RSSSTSDTCM TAVEGAQKKE GIILTGSSEK SIGFLGDSVG  720
THRTTEFGAS KDAPNEGDDM PSHPSEKDFM SLNSCGGLNY TEVSEKEDIQ EKEDRVPMES  780
IVACTSSGNE DIQVNEGRKP MELSEANAFS GSGDSQGKEC RIPMGSSETN TSSVNHVNAS  840
NEKDFSLSED TQKKESHRPI ESCENTTFEI MHHEEAPSTE EVITGVSLGR KVAEGPTRSN  900
ERCSGARGNS ATTLKFGLAC ATKDNQMEDL LNNRTALNET DDPLDAEDSP VFVPPSSRNV  960
ESTYASPLYD PMEDSTSDGI LNIGLGRNTT SKAAELLDLH RDHISSENDS LIHSRGTSSV  1020
SGNREQSVPT ALTLGSNIYF SSAETDDRPE ERHELVVEGQ QGLTVETTSK LDSPGKIEVL  1080
NGAGFISTGI QNWLSLPPSI NSMEMSGQFL NNGFTVSKGR LGLDQSMDDA TSMSQDHDIA  1140
QDMDQRGSED AFFSQDHSIR LCGSDLPHSH LLAPKESSMN GEDQSGIVLT GLHPSSSVNV  1200
LGHYGYQTDD IPVDNLNKLP SALESSDAMD ADQVSSQVCV NPDHTNDSNT ENAGVESNAK  1260
QDLLSSWIEA IVSEAKKEHP PCKSTPLTVG LPDKLLEPKD SDRKTLLETV VPSAVKSPQI  1320
NFASSTLQKV APKQVTLPSS SREPTRANQN ARHRTWHRGN IASSSSSLHA SQPLGLPPKL  1380
PPKKNDKAQN SYIRKGNALI RNPSNGNHPH SSTGHDTQNK LNKPVVRRSM NFVRTADTKD  1440
LANSNISVER PKTPPLPLHT KSSCPTTLLE PLSQTLQKQH GHEAEKEDLT GQPKSGVDNS  1500
SIKSAQKSEP SDPSKVVYVR PKSNQLVAAQ RQHPIDLVNS PTDKILSLQA PIASDLYLKK  1560
RKNQIVLSSC SPSDGLSTKE TLPAENSNSE EKKDLMIACS ISGIPGVKDR PQKALQTTNN  1620
VGRFSHVWTL NGQQPQRKGF MGSSHMNAFP RILPWKRKIF CKNFRSSHMS NVSSIRIVRK  1680
LLQTRKRDMI YTVSTDGFSL RKSGVLSVGG SSLKWSRSLE KRSQKVNKEA TLALAEVERR  1740
KREKRKRQSL HDKGDHQFES VTGNQLRNSR QSSSDLRKPS TCNEYVRVSK GNQLVRNPKN  1800
VIRMLASDKV RWSLHTVRSR LAKKQQYCQF FTRFGECKKP RGKCPYIHDR AKVLPERMPD  1860
CSYFLRGLCT NIACPYRHVK VNLNAPVCED FLKGYCAYGD ECHKKHSYVC PVFEATGECP  1920
QGSRCKLHHP KSKVKSKSRR PDFLQNSSWG RYFDASIDHQ DETRKVSLDE DEREKPQRVF  1980
SDGDLGFISL DDDADEDVTA LDASDDIPLM ELDSGDLSAQ TDNLDALIKP LRIMRTARV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1739	1744	RRKREK

Link Out ? help Back to Top
Ensembl	OGLUM06G23280.2