PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G23150.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ERF

Protein Properties

Length: 392aa MW: 40716.9 Da PI: 8.9997

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G23150.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	43.9	6e-14	103	155	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G r ++ +g+++AeIr + ++ r++lg+fgtaeeAa a++ a+ ++g OGLUM06G23150.1 103 KYRGARKRP-WGKYAAEIRIR---NtmgVKERVWLGTFGTAEEAAWAYDTAATVIHG 155 8******.******5...445588*******************977765 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MGRPVKQKTT TWLVELLREY CQRAAAQATA GNGAVAAAAA VEGEINTDGL AALAAEAEGF 60 AAANGEGWVA PAVEGEGEGF VGAPVVEGEE GLTAELPVAA ERKYRGARKR PWGKYAAEIR 120 IRNTMGVKER VWLGTFGTAE EAAWAYDTAA TVIHGDKATT NFPRAPLRPA TTPVMRSMLV 180 FFGIAHLVRS LVPRARGPRG RGGGAGGRGR SRRRRAAAAA APSAPASEAP PPPPPSSALV 240 PEPELQVQGG RGERGRGRGR GRGGGRGGRR GRGRTPARVV AEDSPMLQAT TPAAAPAPAP 300 ALAPAPANQA IFQPMIIPPG GGVVAPDDFL LSAISDDEPV LLHKKPKLLG VYTPPDSPDQ 360 FVMEFFADLG DGDDILSSSF WQDPAGDGED TQ

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MGRPVKQKTT TWLVELLREY CQRAAAQATA GNGAVAAAAA VEGEINTDGL AALAAEAEGF  60
AAANGEGWVA PAVEGEGEGF VGAPVVEGEE GLTAELPVAA ERKYRGARKR PWGKYAAEIR  120
IRNTMGVKER VWLGTFGTAE EAAWAYDTAA TVIHGDKATT NFPRAPLRPA TTPVMRSMLV  180
FFGIAHLVRS LVPRARGPRG RGGGAGGRGR SRRRRAAAAA APSAPASEAP PPPPPSSALV  240
PEPELQVQGG RGERGRGRGR GRGGGRGGRR GRGRTPARVV AEDSPMLQAT TPAAAPAPAP  300
ALAPAPANQA IFQPMIIPPG GGVVAPDDFL LSAISDDEPV LLHKKPKLLG VYTPPDSPDQ  360
FVMEFFADLG DGDDILSSSF WQDPAGDGED TQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	251	261	RGERGRGRGRG
2	254	264	RGERGRGRGRG
3	258	268	RGERGRGRGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51190.1	1e-12	ERF family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G23150.1