PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G23100.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ERF

Protein Properties

Length: 996aa MW: 97854.4 Da PI: 5.9102

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G23100.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	32.8	1.8e-10	121	172	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr + r+vAeI+ p+ r +lg+f+tae+ a a++aa++ l+ge OGLUM06G23100.1 121 TKYRGVRVRF-GTRYVAEIHNPT----GaGRLWLGTFDTAEQGAWAYDAAARVLRGE 172 69******.8*****95....258**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 996 aa Download sequence
MDPEERVAEA MKGLLVEYSQ QSARLAVQVR GNEYRRAAAA GGGGGFLLSP GERERLRAGS 60 GLELVIVPVM EGDQVVSSSA SAEVLVSPLV EGEVRVVPAV ERRRWRRQAA AEEWEEIDPE 120 TKYRGVRVRF GTRYVAEIHN PTGAGRLWLG TFDTAEQGAW AYDAAARVLR GEAAATNFGD 180 PAQAPSPLSA EMRSMLAFFD RARARRERVV EERGAAAAEA EASEAPAPAP LLLLPAPPPS 240 SDVSPVTVQV AAPPSSSDAA PVPATLLSDA SPVIVQVPVP PSSDAAPVPA PTLSDASPVP 300 VQVPAPQSSD VALVPVPVQV PAPTSSGSDE AAFVGGRGRG TGAGVGGGRG LGRGGGGGRG 360 RGGKRAPTTA VAVVAPPPQV PTPAAVAAAP TLAPASAAAH APALSVEPDA LVSPASSAIA 420 PAYAVPAPAP APAALEALAP PPPAAPASLS ASGGERGCVA IANAAVAGRG RGRGSGAKRA 480 PTAVNVGAPP PQARTPAAAP AKAFVSAPAP APSAVVSPVL AASASAAAAF APAPAPAAAE 540 VIPPPPPLPA AASTAAAPAA ERKRKLLTAS SLSSSGGERG RGRARGRGRV ADAAIAGGSR 600 GRGRGCGLTP AVVTVGAPPP PSAALAPAPA SAPSLEPNDI IAPVVSSTLA PGASDAAAAA 660 PVAAPEAILI PMPPPVAAAA AAAPVPKKRK LLTASTLSGS GGPGRGRGRV AEATFAGRGR 720 GVWSGRGRGR GRIPTEVIVG TPSPSAPTPA PASATAPLIQ SNVVISPVPP TLTASGVAAW 780 PTVPAIPELT TAAAAPLPEK PVLTAHDVVM ATLFPNGVFS YTAGSSHAPP PPPPPPPVAS 840 GSFFQEVIPP GGVPTNYAIH EAPDFDPNIF FANVPDGEQD EPVLLSSTST LLDVDNSLTL 900 VADDAASSAQ AAVDVASSSA QAAIDVPSSS VLAVVDVPSS SAQAAIDVPA SSAQPATDVA 960 SSSTQGAAGN ERSISLEPNA VISPVSSTLT ASAVAA

Sequence ? help Back to Top

Protein Sequence Length: 996 aa Download sequence

MDPEERVAEA MKGLLVEYSQ QSARLAVQVR GNEYRRAAAA GGGGGFLLSP GERERLRAGS  60
GLELVIVPVM EGDQVVSSSA SAEVLVSPLV EGEVRVVPAV ERRRWRRQAA AEEWEEIDPE  120
TKYRGVRVRF GTRYVAEIHN PTGAGRLWLG TFDTAEQGAW AYDAAARVLR GEAAATNFGD  180
PAQAPSPLSA EMRSMLAFFD RARARRERVV EERGAAAAEA EASEAPAPAP LLLLPAPPPS  240
SDVSPVTVQV AAPPSSSDAA PVPATLLSDA SPVIVQVPVP PSSDAAPVPA PTLSDASPVP  300
VQVPAPQSSD VALVPVPVQV PAPTSSGSDE AAFVGGRGRG TGAGVGGGRG LGRGGGGGRG  360
RGGKRAPTTA VAVVAPPPQV PTPAAVAAAP TLAPASAAAH APALSVEPDA LVSPASSAIA  420
PAYAVPAPAP APAALEALAP PPPAAPASLS ASGGERGCVA IANAAVAGRG RGRGSGAKRA  480
PTAVNVGAPP PQARTPAAAP AKAFVSAPAP APSAVVSPVL AASASAAAAF APAPAPAAAE  540
VIPPPPPLPA AASTAAAPAA ERKRKLLTAS SLSSSGGERG RGRARGRGRV ADAAIAGGSR  600
GRGRGCGLTP AVVTVGAPPP PSAALAPAPA SAPSLEPNDI IAPVVSSTLA PGASDAAAAA  660
PVAAPEAILI PMPPPVAAAA AAAPVPKKRK LLTASTLSGS GGPGRGRGRV AEATFAGRGR  720
GVWSGRGRGR GRIPTEVIVG TPSPSAPTPA PASATAPLIQ SNVVISPVPP TLTASGVAAW  780
PTVPAIPELT TAAAAPLPEK PVLTAHDVVM ATLFPNGVFS YTAGSSHAPP PPPPPPPVAS  840
GSFFQEVIPP GGVPTNYAIH EAPDFDPNIF FANVPDGEQD EPVLLSSTST LLDVDNSLTL  900
VADDAASSAQ AAVDVASSSA QAAIDVPSSS VLAVVDVPSS SAQAAIDVPA SSAQPATDVA  960
SSSTQGAAGN ERSISLEPNA VISPVSSTLT ASAVAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	579	588	RGRGRARGRG
2	579	589	RGRGRARGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12980.1	5e-12	ERF family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G23100.1