PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G22250.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 304aa MW: 31910.6 Da PI: 10.2028

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G22250.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20	1.2e-06	109	134	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C+ + Ck G++C+FaHg+ OGLUM06G22250.1 109 KTRMCNKYNTAEGCKWGSKCHFAHGE 134 89**********************96 PP
2	zf-CCCH	36.5	7.9e-12	269	294	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC +f + G C +GdrC+FaHg+ OGLUM06G22250.1 269 FKTKLCENFNK-GSCTFGDRCHFAHGE 294 69*******.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence
MEAGGGKRAA PEGTNGAAKR ARGVNLKVKL IKLWILDIIV LYHLPFFFFL RSTSGCPFGS 60 SCHFLHNFPG GYQAAAKMTS HGGTAVAAPP GRMPLGPGAP NGPPTSSVKT RMCNKYNTAE 120 GCKWGSKCHF AHGERELGKP MLLDNSMPHP MGSMPFEAPP MPGPDIVPPS TFGASATAKI 180 SVDASLAGGI IGKGGTNTKH ISRMTGAKLA IRDNESNPNL KNIELEGTFD QIKHASAMVT 240 ELIVRISGNA PPAKNPGRGS HAGGPGSNFK TKLCENFNKG SCTFGDRCHF AHGESELRKP 300 PAAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	6e-50	C3H family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G22250.1