PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G22070.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 326aa MW: 34432.7 Da PI: 8.7023

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G22070.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.8	4.7e-09	157	204	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++e L+el+P +s k a +L + +++++sLq OGLUM06G22070.1 157 SHSLAERARREKINARMELLKELVPGCS----KVSGTALVLDEIINHVQSLQ 204 8*************************94....22445556666666666655 PP

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence
MRHHSPPPPP PDLSSAVGEI HPPLASAARS SSNGGGSGGS FTALLGLPTS QAMELLLPTA 60 AASAPPPPPA FPADPHLVDR AARFSAFASP SPPSPPPPPP PPPSSSSKRK PDPASKGKAA 120 AKKGKTAASG EDGGDGGEDE KPAYVHVRAR RGQATDSHSL AERARREKIN ARMELLKELV 180 PGCSKVSGTA LVLDEIINHV QSLQRQVEYL SMRLAAVNPR VDFGGLDNFL TTECGRITGL 240 NYKNGMDLEQ VTWPDMGVHG ARNLMQLQQQ FWHGDLAHPL QPPSQWEKRT DTNPPVFSNS 300 SSSLFGYDLA SSGAPAQTGN KLKTEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	6e-51	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G22070.1