PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G21860.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRAS

Protein Properties

Length: 452aa MW: 46728.6 Da PI: 6.7387

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G21860.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	261.2	3.7e-80	143	448	87	374
GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177 + P+l+f+hltaNqaIleav+g++rvHi+D+d+ +G+QWp+Llqa+a+R+ gpp++R+Tg g+ ++++l +tg+rL+ fA+++++pf+ OGLUM06G21860.1 143 IAPFLRFAHLTANQAILEAVDGARRVHILDLDAVHGVQWPPLLQAIAERAdpaLGPPEVRVTGAGA----DRDTLLRTGNRLRAFARSIHLPFH 232 78**********************************************66666*******....9******************* PP GRAS 178 fnvl...................vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse. 251 f++l +a++ ++ L+++p+E+laVn+v+ lh+l ++e ++Lk vk +sP vv+++e+ea +++ OGLUM06G21860.1 233 FTPLllsctttaphhvagtstgaAATASTAAAATGLEFHPDETLAVNCVMFLHNLA-----GHDELAAFLKWVKAMSPAVVTIAEREAGGGGGg 321 99999998888777776644444455577889***************8.....2233567***************9996666 PP GRAS 252 ......sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339 ++ +r+ a+++ysa+f++lea++p+ s+er vE+e+lgrei+ +v +g + + e+W + ++aGF + pls +a++qa+l OGLUM06G21860.1 322 ggdhidDLPRRVGVAMDHYSAVFEALEATVPPGSRERLAVEQEVLGREIEAAVGPSGGR---WWRGIERWGGAARAAGFAARPLSAFAVSQARL 412 8899999*******************************************99998...78899*********************** PP GRAS 340 llrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 llr ++ s+gy v+e +g+ +lgW++rpL+svSaW+ OGLUM06G21860.1 413 LLRLHYpSEGYLVQEARGACFLGWQTRPLLSVSAWQ 448 *********************************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MSCQGSCNCK PRCWTCTLAL PIKPALLRCS LSSSPLAAAA ATFSGSSPSL YSGGGGGDDD 60 GYGGGDGMLR SLHSSSSSDT DNNSGGCKNN GGGGGEAAAA VEGGGDQRAV AAAAPSTRDL 120 LLACADLLQR GDLPAARRAA EIIAPFLRFA HLTANQAILE AVDGARRVHI LDLDAVHGVQ 180 WPPLLQAIAE RADPALGPPE VRVTGAGADR DTLLRTGNRL RAFARSIHLP FHFTPLLLSC 240 TTTAPHHVAG TSTGAAATAS TAAAATGLEF HPDETLAVNC VMFLHNLAGH DELAAFLKWV 300 KAMSPAVVTI AEREAGGGGG GGGDHIDDLP RRVGVAMDHY SAVFEALEAT VPPGSRERLA 360 VEQEVLGREI EAAVGPSGGR WWRGIERWGG AARAAGFAAR PLSAFAVSQA RLLLRLHYPS 420 EGYLVQEARG ACFLGWQTRP LLSVSAWQPS SS

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MSCQGSCNCK PRCWTCTLAL PIKPALLRCS LSSSPLAAAA ATFSGSSPSL YSGGGGGDDD  60
GYGGGDGMLR SLHSSSSSDT DNNSGGCKNN GGGGGEAAAA VEGGGDQRAV AAAAPSTRDL  120
LLACADLLQR GDLPAARRAA EIIAPFLRFA HLTANQAILE AVDGARRVHI LDLDAVHGVQ  180
WPPLLQAIAE RADPALGPPE VRVTGAGADR DTLLRTGNRL RAFARSIHLP FHFTPLLLSC  240
TTTAPHHVAG TSTGAAATAS TAAAATGLEF HPDETLAVNC VMFLHNLAGH DELAAFLKWV  300
KAMSPAVVTI AEREAGGGGG GGGDHIDDLP RRVGVAMDHY SAVFEALEAT VPPGSRERLA  360
VEQEVLGREI EAAVGPSGGR WWRGIERWGG AARAAGFAAR PLSAFAVSQA RLLLRLHYPS  420
EGYLVQEARG ACFLGWQTRP LLSVSAWQPS SS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	2e-63	GRAS family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G21860.1