PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G18230.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 376aa MW: 41385.8 Da PI: 7.1012

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G18230.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.7	2e-52	10	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+e+d++k+ePwdL+ ++ + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+ OGLUM06G18230.2 10 VPPGFRFHPTDEELLYYYLRKKVAYEAIDL-DVIREIDLNKLEPWDLKDrcRIGTgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKA 102 69**************************.9***********943444442456******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++ +g++ktLvfy grap+g+ktdW+mheyrl OGLUM06G18230.2 103 IFLANACRIGMRKTLVFYVGRAPHGKKTDWIMHEYRL 139 *********************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MHPSGGVLSV PPGFRFHPTD EELLYYYLRK KVAYEAIDLD VIREIDLNKL EPWDLKDRCR 60 IGTGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLANACR IGMRKTLVFY 120 VGRAPHGKKT DWIMHEYRLD QDNVDVQEDG WVVCRVFMKK SYQRGLNPAD MAAVDDDDLL 180 LHHHHPFPPA QLHGGAADHK HDGAGGHHHH HLMQPHHHYD DFPSFDPSMQ LPQLMSADQP 240 PPPPPSLLPG VPPSAAAALS SLDVECPQNL MKLTSAAAGG GATGLLHAGG DHRFATAATD 300 WSILDKLLAS HQNLDQLFQG RVIAGASSPA AMAAPSHHQH LMDQLAGGGG GAASSLQRLP 360 LQYLGCEAAD LLRFSK

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MHPSGGVLSV PPGFRFHPTD EELLYYYLRK KVAYEAIDLD VIREIDLNKL EPWDLKDRCR  60
IGTGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLANACR IGMRKTLVFY  120
VGRAPHGKKT DWIMHEYRLD QDNVDVQEDG WVVCRVFMKK SYQRGLNPAD MAAVDDDDLL  180
LHHHHPFPPA QLHGGAADHK HDGAGGHHHH HLMQPHHHYD DFPSFDPSMQ LPQLMSADQP  240
PPPPPSLLPG VPPSAAAALS SLDVECPQNL MKLTSAAAGG GATGLLHAGG DHRFATAATD  300
WSILDKLLAS HQNLDQLFQG RVIAGASSPA AMAAPSHHQH LMDQLAGGGG GAASSLQRLP  360
LQYLGCEAAD LLRFSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79580.1	4e-87	NAC family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G18230.2