PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G17590.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 504aa    MW: 56397 Da    PI: 6.4233
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G17590.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.4e-08125147527
                      --SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                       C +++r+G CkyG +C+F+H+p
  OGLUM06G17590.2 125 DCLHYLRFGRCKYGMNCRFNHPP 147
                      699******************97 PP

2zf-CCCH35.41.8e-11187212126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ++t lC++++  G+Ck+G++CkF+H+
  OGLUM06G17590.2 187 PGTGLCSYYMNRGICKFGSNCKFHHP 212
                      5799*********************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    
MQILCECCSS DHRSSSTPMA TTSSSAADPA AAAISLTPSH QHASSTVTTL DDRRPAGTSS  60
SAGETEPKAA VEPQEYPRRP GWPDCSYYVE FGSCKFGMGC LYNHPAKHAG GCDKLEHPQR  120
PGEHDCLHYL RFGRCKYGMN CRFNHPPDRV PQRQVYFPWK ACHCHHSEGK SEAEQVKLNF  180
IGLPLRPGTG LCSYYMNRGI CKFGSNCKFH HPNPGSGHEK WDGSLQTNQI SSGVNIYSVL  240
DHGELNEQPV PSKDGFQPAE QIRYTRDQLL QLRETVDVPK DIMKLIQDIN VELRGEDESW  300
APNETNYVPA LSYKRFEETD SHDWHSRSSQ NPVVVEEEKF RDDTREAKEP YALGWKQKQF  360
NNQDRKSFQS DSKTQASPTL ALHKAEDPWS IRRGTTPEKY KVLRTVKGIL NLSTPEKFDI  420
LKGQLIEAGI TRTDILKAVT DCENFHFEPL ENVDLLNIIF DGVLDSVLAG TGANKIVNAI  480
VGTEKCSIAS NDVGIIDKDE PEKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-29C3H family protein