PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G17590.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 621aa    MW: 69960.9 Da    PI: 6.608
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G17590.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.6e-08125147527
                      --SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                       C +++r+G CkyG +C+F+H+p
  OGLUM06G17590.1 125 DCLHYLRFGRCKYGMNCRFNHPP 147
                      699******************96 PP

2zf-CCCH35.12.3e-11187212126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ++t lC++++  G+Ck+G++CkF+H+
  OGLUM06G17590.1 187 PGTGLCSYYMNRGICKFGSNCKFHHP 212
                      5799*********************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    
MQILCECCSS DHRSSSTPMA TTSSSAADPA AAAISLTPSH QHASSTVTTL DDRRPAGTSS  60
SAGETEPKAA VEPQEYPRRP GWPDCSYYVE FGSCKFGMGC LYNHPAKHAG GCDKLEHPQR  120
PGEHDCLHYL RFGRCKYGMN CRFNHPPDRV PQRQVYFPWK ACHCHHSEGK SEAEQVKLNF  180
IGLPLRPGTG LCSYYMNRGI CKFGSNCKFH HPNPGSGHEK WDGSLQTNQI SSGVNIYSVL  240
DHGELNEQPV PSKDGFQPAE QIRYTRDQLL QLRETVDVPK DIMKLIQDIN VELRGEDESW  300
APNETNYVPA LSYKRFEETD SHDWHSRSSQ NPVVVEEEKF RDDTREAKEP YALGWKQKQF  360
NNQDRKSFQS DSKTQASPTL ALHKAEDPWS IRRGTTPEKY KVLRTVKGIL NLSTPEKFDI  420
LKGQLIEAGI TRTDILKDVI DLILEKAVAE PTLCPMYAQL CSYLNENLTA FPPKDTHCEQ  480
ITFKQALSDK CQQAFEIARN VRADIYKLTG RDQEMERRDK ERLVKHQILG KICLIRDLLK  540
QKMVPDKIVH QIAQAVTDCE NFHFEPLENV DLLNIIFDGV LDSVLAGTGA NKIVNAIVGT  600
EKCSIASNDV GIIDKDEPEK S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.13e-29C3H family protein