PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM06G17590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 621aa MW: 69960.9 Da PI: 6.608 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.3 | 5.6e-08 | 125 | 147 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C +++r+G CkyG +C+F+H+p OGLUM06G17590.1 125 DCLHYLRFGRCKYGMNCRFNHPP 147 699******************96 PP | |||||||
2 | zf-CCCH | 35.1 | 2.3e-11 | 187 | 212 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++t lC++++ G+Ck+G++CkF+H+ OGLUM06G17590.1 187 PGTGLCSYYMNRGICKFGSNCKFHHP 212 5799*********************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 621 aa Download sequence |
MQILCECCSS DHRSSSTPMA TTSSSAADPA AAAISLTPSH QHASSTVTTL DDRRPAGTSS 60 SAGETEPKAA VEPQEYPRRP GWPDCSYYVE FGSCKFGMGC LYNHPAKHAG GCDKLEHPQR 120 PGEHDCLHYL RFGRCKYGMN CRFNHPPDRV PQRQVYFPWK ACHCHHSEGK SEAEQVKLNF 180 IGLPLRPGTG LCSYYMNRGI CKFGSNCKFH HPNPGSGHEK WDGSLQTNQI SSGVNIYSVL 240 DHGELNEQPV PSKDGFQPAE QIRYTRDQLL QLRETVDVPK DIMKLIQDIN VELRGEDESW 300 APNETNYVPA LSYKRFEETD SHDWHSRSSQ NPVVVEEEKF RDDTREAKEP YALGWKQKQF 360 NNQDRKSFQS DSKTQASPTL ALHKAEDPWS IRRGTTPEKY KVLRTVKGIL NLSTPEKFDI 420 LKGQLIEAGI TRTDILKDVI DLILEKAVAE PTLCPMYAQL CSYLNENLTA FPPKDTHCEQ 480 ITFKQALSDK CQQAFEIARN VRADIYKLTG RDQEMERRDK ERLVKHQILG KICLIRDLLK 540 QKMVPDKIVH QIAQAVTDCE NFHFEPLENV DLLNIIFDGV LDSVLAGTGA NKIVNAIVGT 600 EKCSIASNDV GIIDKDEPEK S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 3e-29 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM06G17590.1 |